RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 A8MUA0 341 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 PSMD9O00233 223 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 SCDO00767 359 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 VEGFDO43915 354 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 CPNE6O95741 557 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 RPS26P62854 115 aaKnown RBP13.2□□□□□ -0.3
SYNPO-205ENST00000522122 EMX1Q04741 257 aaPredicted RBP13.2□□□□□ -0.3
SYNPO-205ENST00000522122 PROX2Q3B8N5 592 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 CDKL4Q5MAI5 379 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 NRROSQ86YC3 692 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 SAMD12Q8N8I0 201 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 DPYSL5Q9BPU6 564 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 CCDC32Q9BV29 185 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 OR2B2Q9GZK3 357 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 RBM38Q9H0Z9 239 aaKnown RBP13.2□□□□□ -0.3
SYNPO-205ENST00000522122 RBBP6Q7Z6E9 1792 aaKnown RBP13.2□□□□□ -0.3
SYNPO-205ENST00000522122 SIPA1L1O43166 1804 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 SCN9AQ15858 1988 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 A0A1B0GTW7 788 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 RTCAO00442 366 aaKnown RBP13.2□□□□□ -0.3
SYNPO-205ENST00000522122 CACNG3O60359 315 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 B4GALT2O60909 372 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 JRKO75564 520 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 PTNP21246 168 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 GSTM4Q03013 218 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 ZNF33BQ06732 778 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 CTSL3PQ5NE16 218 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 HS3ST5Q8IZT8 346 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 MAL2Q969L2 176 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 S100A16Q96FQ6 103 aaKnown RBP13.2□□□□□ -0.3
SYNPO-205ENST00000522122 INPP5KQ9BT40 448 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 ZNF639Q9UID6 485 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 SPEF1Q9Y4P9 236 aa13.2□□□□□ -0.3
SYNPO-205ENST00000522122 BLOC1S5-TXNDC5H3BN57 136 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 ADAP00813 363 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 FHP07954 510 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 RAB2AP61019 212 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 ID2Q02363 134 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 GFOD2Q3B7J2 385 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 C22orf42Q6IC83 251 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 RAB7BQ96AH8 199 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 MNTQ99583 582 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 RGS17Q9UGC6 210 aaPredicted RBP13.19□□□□□ -0.3
SYNPO-205ENST00000522122 ZFR2Q9UPR6 939 aaKnown RBP13.19□□□□□ -0.3
SYNPO-205ENST00000522122 MAU2Q9Y6X3 613 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 ENPP4Q9Y6X5 453 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 SH3D21A4FU49 640 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 CLCA1A8K7I4 914 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 I3L521 148 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 SLC19A2O60779 497 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 SLC16A8O95907 504 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 TNFP01375 233 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 MAP2K3P46734 347 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 FPGSQ05932 587 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 RASGEF1BQ0VAM2 473 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 GTF2IRD2BQ6EKJ0 949 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 GTF2IRD2Q86UP8 949 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 PAQR7Q86WK9 346 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 C7orf61Q8IZ16 206 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.19□□□□□ -0.3
SYNPO-205ENST00000522122 HMGB4Q8WW32 186 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 RNF38Q9H0F5 515 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 R3HDMLQ9H3Y0 253 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 CLMPQ9H6B4 373 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 ZNF69Q9UC07 566 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 USP22Q9UPT9 525 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 C5orf51A6NDU8 294 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 EMC8O43402 210 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 RHOP08100 348 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 KCNC1P48547 511 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 HNRNPFP52597 415 aaKnown RBP13.19□□□□□ -0.3
SYNPO-205ENST00000522122 ARFRP1Q13795 201 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 DECR1Q16698 335 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 PRAMEF17Q5VTA0 474 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 TMEM207Q6UWW9 146 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 CBARPQ8N350 705 aaPredicted RBP13.19□□□□□ -0.3
SYNPO-205ENST00000522122 NUP43Q8NFH3 380 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 FIBINQ8TAL6 211 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 PHOSPHO1Q8TCT1 267 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 THEM6Q8WUY1 208 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 TTYH2Q9BSA4 534 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 HTR3EA5X5Y0 456 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 E2F3O00716 465 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 GSTT2P0CG29 244 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 RBM34P42696 430 aaKnown RBP13.19□□□□□ -0.3
SYNPO-205ENST00000522122 SLAMF1Q13291 335 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 SEC23BQ15437 767 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 UGT8Q16880 541 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 MANEALQ5VSG8 457 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.19□□□□□ -0.3
SYNPO-205ENST00000522122 SUN3Q8TAQ9 357 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 SACM1LQ9NTJ5 587 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 GPRC5BQ9NZH0 403 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 CARD8Q9Y2G2 431 aa13.19□□□□□ -0.3
SYNPO-205ENST00000522122 B4DGG1 531 aa13.18□□□□□ -0.3
SYNPO-205ENST00000522122 CSN2P05814 226 aa13.18□□□□□ -0.3
SYNPO-205ENST00000522122 NRG3P56975 720 aa13.18□□□□□ -0.3
SYNPO-205ENST00000522122 COMMD6Q7Z4G1 85 aa13.18□□□□□ -0.3
SYNPO-205ENST00000522122 Q8N402 240 aa13.18□□□□□ -0.3
SYNPO-205ENST00000522122 RFT1Q96AA3 541 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms