RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 HOXC5Q00444 222 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 SCN1BQ07699 218 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 TYW3Q6IPR3 259 aaKnown RBP8.78□□□□□ -1
LIMCH1-215ENST00000512632 ABI3BPQ7Z7G0 1075 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 SLC9B2Q86UD5 537 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 ADGRF3Q8IZF5 1079 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 IRF7Q92985 503 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 NECTIN4Q96NY8 510 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 OR2B2Q9GZK3 357 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 RACGAP1Q9H0H5 632 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 C11orf54Q9H0W9 315 aaPredicted RBP8.78□□□□□ -1
LIMCH1-215ENST00000512632 ASAH2Q9NR71 780 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 COMMD3Q9UBI1 195 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 CMAHPQ9Y471 501 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 PCDHGB2Q9Y5G2 931 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 FEZF1A0PJY2 475 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 PITPNM1O00562 1244 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 PLPP1O14494 284 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 UGT2B17O75795 530 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 OR12D1P0DN82 309 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.78□□□□□ -1
LIMCH1-215ENST00000512632 PYDC2Q56P42 97 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 DDX53Q86TM3 631 aaKnown RBP8.78□□□□□ -1
LIMCH1-215ENST00000512632 COMTD1Q86VU5 262 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 ASCC1Q8N9N2 400 aaKnown RBP8.78□□□□□ -1
LIMCH1-215ENST00000512632 GATAD2BQ8WXI9 593 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 MGAT4BQ9UQ53 548 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 TRAPPC4Q9Y296 219 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 HCFC2Q9Y5Z7 792 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 DSPPQ9NZW4 1301 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 IRS1P35568 1242 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 ELOAQ14241 798 aaKnown RBP8.78□□□□□ -1
LIMCH1-215ENST00000512632 CRTC2Q53ET0 693 aaPredicted RBP8.78□□□□□ -1
LIMCH1-215ENST00000512632 RAET1GQ6H3X3 334 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 PODNL1Q6PEZ8 512 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 PROKR2Q8NFJ6 384 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 OR5AR1Q8NGP9 310 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 GPA33Q99795 319 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 MND1Q9BWT6 205 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 SGPP1Q9BX95 441 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 MIXL1Q9H2W2 232 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 KCND3Q9UK17 655 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 PLXNB3Q9ULL4 1909 aa8.78□□□□□ -1
LIMCH1-215ENST00000512632 PNLIPRP1P54315 467 aa8.77□□□□□ -1
LIMCH1-215ENST00000512632 DCDC1P59894 354 aa8.77□□□□□ -1
LIMCH1-215ENST00000512632 SNRPGP62308 76 aaKnown RBP8.77□□□□□ -1
LIMCH1-215ENST00000512632 SNAPC1Q16533 368 aa8.77□□□□□ -1
LIMCH1-215ENST00000512632 TOR1AIP1Q5JTV8 583 aa8.77□□□□□ -1
LIMCH1-215ENST00000512632 SNAP47Q5SQN1 464 aa8.77□□□□□ -1
LIMCH1-215ENST00000512632 PRAMEF14Q5SWL7 426 aa8.77□□□□□ -1
LIMCH1-215ENST00000512632 PRAMEF13Q5VWM6 474 aa8.77□□□□□ -1
LIMCH1-215ENST00000512632 ZER1Q7Z7L7 766 aa8.77□□□□□ -1
LIMCH1-215ENST00000512632 GLCCI1Q86VQ1 547 aa8.77□□□□□ -1
LIMCH1-215ENST00000512632 TMEM98Q9Y2Y6 226 aa8.77□□□□□ -1
LIMCH1-215ENST00000512632 HYKKA2RU49 373 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 GLOD5A6NK44 160 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 RGS13O14921 159 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 NR2F1P10589 423 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 CXCR2P25025 360 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 APEX1P27695 318 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 GPC1P35052 558 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 GPR1P46091 355 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 GIPRP48546 466 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 WDR5P61964 334 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 DEFB103AP81534 67 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 MLLT1Q03111 559 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 FLYWCH1Q4VC44 716 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 ZNF805Q5CZA5 627 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 MFSD4BQ5TF39 518 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 PAMR1Q6UXH9 720 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 PARS2Q7L3T8 475 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 IQCHQ86VS3 1027 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 AMER3Q8N944 861 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 OR4K5Q8NGD3 323 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 OR52I1Q8NGK6 324 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 APOBEC4Q8WW27 367 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 TM9SF4Q92544 642 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 SNX18Q96RF0 628 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 NELL2Q99435 816 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 TREX2Q9BQ50 279 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 CUEDC1Q9NWM3 386 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 TAC3Q9UHF0 121 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 HCN2Q9UL51 889 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 GRIP1Q9Y3R0 1128 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 FAM172BPA6NC97 362 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 CCDC182A6NF36 153 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 NTN1O95631 604 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 EPHX1P07099 455 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 SRPRAP08240 638 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 CSF3P09919 207 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 MSL3P1P0C860 447 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 PIPP12273 146 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 MMP11P24347 488 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 UNC5DQ6UXZ4 953 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 LAPTM4BQ86VI4 370 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 CHAC2Q8WUX2 184 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 TM4SF18Q96CE8 201 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 FZD3Q9NPG1 666 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 IL36AQ9UHA7 158 aa8.77□□□□□ -1.01
LIMCH1-215ENST00000512632 H7BY64 318 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms