RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TBC1D20Q96BZ9 403 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 CPPED1Q9BRF8 314 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 C11orf84Q9BUA3 381 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 CNOT2Q9NZN8 540 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 MGAT4CQ9UBM8 478 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 UBQLN1Q9UMX0 589 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 KCTD3Q9Y597 815 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 NUBP2Q9Y5Y2 271 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 TMEM82A0PJX8 343 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 C19orf81C9J6K1 198 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 CACNG3O60359 315 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 SERPINA3P01011 423 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 HEXBP07686 556 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 IL1RNP18510 177 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 BTCP35070 178 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 SNX16P57768 344 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 BCL2L1Q07817 233 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 GSG1Q2KHT4 349 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 SPIN4Q56A73 249 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 IDNKQ5T6J7 187 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 OR2G6Q5TZ20 316 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 EEF1DP3Q658K8 133 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 FAM109BQ6ICB4 259 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 SERINC5Q86VE9 423 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 SPAG16Q8N0X2 631 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 SSX3Q99909 188 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 ATF6BQ99941 703 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 VRK1Q99986 396 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 NIFKQ9BYG3 293 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 AGO3Q9H9G7 860 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 TBC1D17Q9HA65 648 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 AFF4Q9UHB7 1163 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 LSM2Q9Y333 95 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 DBX1A6NMT0 343 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 MCRIP1C9JLW8 97 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 POP4O95707 220 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 OPN1SWP03999 348 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 S100A11P31949 105 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 SLC14A2Q15849 920 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 KCNA10Q16322 511 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 CCDC157Q569K6 752 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 XKR3Q5GH77 459 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 METAP1DQ6UB28 335 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 CALHM3Q86XJ0 350 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 OR4A15Q8NGL6 344 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 SNX33Q8WV41 574 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 LURAP1Q96LR2 239 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 DUSP16Q9BY84 665 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 GSDMCQ9BYG8 508 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 PCTPQ9UKL6 214 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 FLVCR2Q9UPI3 526 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 POFUT2Q9Y2G5 429 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 CHST2Q9Y4C5 530 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 BRCA1P38398 1863 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 FXYD6-FXYD2A0A087WZ82 144 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 I6L893 689 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 VEGFDO43915 354 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 TSPAN3O60637 253 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 ICOSLGO75144 302 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 IGF2P01344 180 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 ZDHHC11BP0C7U3 371 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 MATKP42679 507 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 MRPL19P49406 292 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 RNF4P78317 190 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 OC90Q02509 493 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 PDZK1IP1Q13113 114 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 INSL4Q14641 139 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 CLINT1Q14677 625 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 MARCH8Q5T0T0 291 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 FUT10Q6P4F1 479 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 MZT2AQ6P582 158 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 TMEM185AQ8NFB2 350 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 PXT1Q8NFP0 134 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 OR6B3Q8NGW1 331 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 GRAPLQ8TC17 118 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 CPEB1Q9BZB8 566 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 FXYD6Q9H0Q3 95 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 RAI2Q9Y5P3 530 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 COL18A1P39060 1754 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 ZNF638Q14966 1978 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 C2orf92A0A1B0GVN3 265 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 PSMD3O43242 534 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 B4GALT5O43286 388 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 ANXA9O76027 345 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 ATF3P18847 181 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 AKAP5P24588 427 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 VEGFCP49767 419 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 GZMMP51124 257 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 RAB5BP61020 215 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 ITKQ08881 620 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 MLLT11Q13015 90 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 HTR4Q13639 388 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 FAM187BQ17R55 369 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 C18orf21Q32NC0 220 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 OR5M10Q6IEU7 315 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 MACC1Q6ZN28 852 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 GPR135Q8IZ08 494 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 RNF149Q8NC42 400 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 RPLP0P6Q8NHW5 317 aa11.47□□□□□ -0.57
LIMCH1-213ENST00000511496 ZDHHC15Q96MV8 337 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms