RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 CASQ2O14958 399 aaPredicted RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 CYTH3O43739 400 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 ZNF861PO60384 105 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 TADA2AO75478 443 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 LUC7L3O95232 432 aaKnown RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 STAMBPO95630 424 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 DLATP10515 647 aaKnown RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 SFTPCP11686 197 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 FERP16591 822 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 AZGP1P25311 298 aaKnown RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 MC5RP33032 325 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 HSPA1LP34931 641 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 TCF7P36402 384 aaPredicted RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 LIMK1P53667 647 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 UBASH3AP57075 661 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 PAX2Q02962 417 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 LRRC74AQ0VAA2 488 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 PSG7Q13046 419 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 SNTB1Q13884 538 aaKnown RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 C17orf58Q2M2W7 97 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 ZNF542PQ5EBM4 170 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 ARMC4Q5T2S8 1044 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 SLC30A6Q6NXT4 461 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 GBP6Q6ZN66 633 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 RFPL4BQ6ZWI9 263 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 KRT74Q7RTS7 529 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 CENPVQ7Z7K6 275 aaPredicted RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 MFN1Q8IWA4 741 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 C10orf67Q8IYJ2 551 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 CCDC170Q8IYT3 715 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 CCAR2Q8N163 923 aaKnown RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 NKAIN3Q8N8D7 197 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 ARL10Q8N8L6 244 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 CLEC1AQ8NC01 280 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 KIF18AQ8NI77 898 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 CTNNBL1Q8WYA6 563 aaPredicted RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 GDAP1L1Q96MZ0 367 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 RUFY1Q96T51 708 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 OSBPL10Q9BXB5 764 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 FAM129AQ9BZQ8 928 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 TNMDQ9H2S6 317 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 MMADHCQ9H3L0 296 aaPredicted RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 PATZ1Q9HBE1 687 aaKnown RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 BATF3Q9NR55 127 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 IARS2Q9NSE4 1012 aaKnown RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 PDRG1Q9NUG6 133 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 UBAP1Q9NZ09 502 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 TBK1Q9UHD2 729 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 KLHL21Q9UJP4 597 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 PRELID1Q9Y255 219 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 TMED5Q9Y3A6 229 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 ZNF175Q9Y473 711 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 GMEB1Q9Y692 573 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 CDC42BPBQ9Y5S2 1711 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 UHRF1BP1LA0JNW5 1464 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 KIR2DL5BA0A0G2JN68 375 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 KIR2DL5BA0A0G2JPC4 375 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 GOLGA6L4A6NEF3 574 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 SAP18O00422 153 aaKnown RBP1.66□□□□□ -2.14
NUP54-208ENST00000508604 POLR3GO15318 223 aaPredicted RBP1.66□□□□□ -2.14
NUP54-208ENST00000508604 RTN2O75298 545 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 B3GALNT1O75752 331 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 YEATS4O95619 227 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 BAG2O95816 211 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 VIMP08670 466 aaKnown RBP1.66□□□□□ -2.14
NUP54-208ENST00000508604 RPSAP08865 295 aaKnown RBP1.66□□□□□ -2.14
NUP54-208ENST00000508604 OR9G9P0C7N8 305 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 HSD17B1P14061 328 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 ATP5DP30049 168 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 PPP2R1BP30154 601 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 CCT6AP40227 531 aaKnown RBP1.66□□□□□ -2.14
NUP54-208ENST00000508604 BPIFB3P59826 476 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 TPM4P67936 248 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 AIMP1Q12904 312 aaKnown RBP1.66□□□□□ -2.14
NUP54-208ENST00000508604 PPA1Q15181 289 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 MAPK11Q15759 364 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 INAQ16352 499 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 USH1GQ495M9 461 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 LRRC23Q53EV4 343 aaPredicted RBP1.66□□□□□ -2.14
NUP54-208ENST00000508604 SLC10A5Q5PT55 438 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 ZNF658Q5TYW1 1059 aaPredicted RBP1.66□□□□□ -2.14
NUP54-208ENST00000508604 ARMC3Q5W041 872 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 GPR139Q6DWJ6 353 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 CAVIN1Q6NZI2 390 aaKnown RBP1.66□□□□□ -2.14
NUP54-208ENST00000508604 UNC5DQ6UXZ4 953 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 SYT10Q6XYQ8 523 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 CATSPER4Q7RTX7 472 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 SNX32Q86XE0 403 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 SLC7A5P1Q8MH63 180 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 KIR2DL5AQ8N109 375 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 C14orf178Q8N769 122 aaPredicted RBP1.66□□□□□ -2.14
NUP54-208ENST00000508604 LINC00469Q8N7U9 141 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 POGLUT1Q8NBL1 392 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 CDKL2Q92772 493 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 SLC35B4Q969S0 331 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 ZMAT2Q96NC0 199 aaKnown RBP1.66□□□□□ -2.14
NUP54-208ENST00000508604 OR5M11Q96RB7 305 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 ABCC13Q9NSE7 274 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 ZNF446Q9NWS9 450 aa1.66□□□□□ -2.14
NUP54-208ENST00000508604 AIPL1Q9NZN9 384 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms