RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 SAP130Q9H0E3 1048 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 HAUS4Q9H6D7 363 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 UVRAGQ9P2Y5 699 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 VTI1BQ9UEU0 232 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 KLHL21Q9UJP4 597 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 RIMKLBQ9ULI2 386 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 SH2B3Q9UQQ2 575 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 PMF1-BGLAPU3KQ54 211 aa7.22□□□□□ -1.25
USP54-211ENST00000474929 EPPK1P58107 5090 aaKnown RBP7.22□□□□□ -1.25
USP54-211ENST00000474929 TRBC2A0A5B9 178 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 CCDC162PA2VCL2 907 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 M0QZ24 198 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 PFDN6O15212 129 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 SYF2O95926 243 aaKnown RBP7.21□□□□□ -1.26
USP54-211ENST00000474929 TGM6O95932 706 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 KRT1P04264 644 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 RPS3P23396 243 aaKnown RBP eCLIP7.21□□□□□ -1.26
USP54-211ENST00000474929 ADH6P28332 368 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 PPP2R1BP30154 601 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 AHRP35869 848 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 CHN2P52757 468 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 HNRNPH2P55795 449 aaKnown RBP7.21□□□□□ -1.26
USP54-211ENST00000474929 STXBP1P61764 594 aaKnown RBP7.21□□□□□ -1.26
USP54-211ENST00000474929 TBPL1P62380 186 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 PRAMEP78395 509 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 CHRNB3Q05901 458 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 KLHL30Q0D2K2 578 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 GBX1Q14549 363 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 POU6F1Q14863 301 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 CYP1B1Q16678 543 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 TTLL9Q3SXZ7 439 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 GLCCI1Q86VQ1 547 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 GBP7Q8N8V2 638 aaPredicted RBP7.21□□□□□ -1.26
USP54-211ENST00000474929 PPFIBP2Q8ND30 876 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 OR4L1Q8NH43 312 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 UTP15Q8TED0 518 aaKnown RBP7.21□□□□□ -1.26
USP54-211ENST00000474929 PTPMT1Q8WUK0 201 aaPredicted RBP7.21□□□□□ -1.26
USP54-211ENST00000474929 HSD17B8Q92506 261 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 ANKRD7Q92527 254 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 C3orf49Q96BT1 292 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 ALKBH8Q96BT7 664 aaKnown RBP7.21□□□□□ -1.26
USP54-211ENST00000474929 ERGIC2Q96RQ1 377 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 HAUS8Q9BT25 410 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 POTEKPQ9BYX7 375 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 STMN4Q9H169 189 aaPredicted RBP7.21□□□□□ -1.26
USP54-211ENST00000474929 UNKLQ9H9P5 680 aaKnown RBP7.21□□□□□ -1.26
USP54-211ENST00000474929 RNF122Q9H9V4 155 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 PLSCR4Q9NRQ2 329 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 SNX15Q9NRS6 342 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 DDX56Q9NY93 547 aaKnown RBP7.21□□□□□ -1.26
USP54-211ENST00000474929 ZFP69BQ9UJL9 534 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 AMFRQ9UKV5 643 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 GRIP1Q9Y3R0 1128 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 NINQ8N4C6 2090 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 TENM3Q9P273 2699 aa7.21□□□□□ -1.26
USP54-211ENST00000474929 MROH6A6NGR9 719 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 OR51F1A6NGY5 319 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 OR6C76A6NM76 312 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 SCAMP2O15127 329 aaKnown RBP7.2□□□□□ -1.26
USP54-211ENST00000474929 OR1F1O43749 312 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 ZBTB14O43829 449 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 TNFRSF21O75509 655 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 CBR3O75828 277 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 SNUPNO95149 360 aaKnown RBP7.2□□□□□ -1.26
USP54-211ENST00000474929 GOT2P00505 430 aaKnown RBP7.2□□□□□ -1.26
USP54-211ENST00000474929 ESR1P03372 595 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 SERPIND1P05546 499 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 TPSB2P20231 275 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 ZFP36P26651 326 aaKnown RBP7.2□□□□□ -1.26
USP54-211ENST00000474929 PSMB4P28070 264 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 TTKP33981 857 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 LHX2P50458 406 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 GFRA1P56159 465 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 NRG3P56975 720 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 TAS2R40P59535 323 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 UBE2HP62256 183 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 BSPH1Q075Z2 132 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 BIKQ13323 160 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 KRT31Q15323 416 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 TPSAB1Q15661 275 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 FAM182AQ5T1J6 154 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 LRRC38Q5VT99 294 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 ZNF544Q6NX49 715 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 TMEM81Q6P7N7 255 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 SBSNQ6UWP8 590 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 ZNF571Q7Z3V5 609 aaPredicted RBP7.2□□□□□ -1.26
USP54-211ENST00000474929 YRDCQ86U90 279 aaKnown RBP7.2□□□□□ -1.26
USP54-211ENST00000474929 TRIM42Q8IWZ5 723 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 GALNT12Q8IXK2 581 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 MUC15Q8N387 334 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 SPPL2AQ8TCT8 520 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 GFM2Q969S9 779 aaKnown RBP7.2□□□□□ -1.26
USP54-211ENST00000474929 GAL3ST3Q96A11 431 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 HAUS1Q96CS2 278 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 SFXN2Q96NB2 322 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 GORASP1Q9BQQ3 440 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 LRRC40Q9H9A6 602 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 NTN4Q9HB63 628 aa7.2□□□□□ -1.26
USP54-211ENST00000474929 EIF2B3Q9NR50 452 aaKnown RBP7.2□□□□□ -1.26
USP54-211ENST00000474929 DDX28Q9NUL7 540 aaKnown RBP7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms