RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 ZNF670-ZNF695F2Z2N8 137 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 MMP11P24347 488 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 AZGP1P25311 298 aaKnown RBP9.34□□□□□ -0.91
SS18-203ENST00000415083 PTX3P26022 381 aaPredicted RBP9.34□□□□□ -0.91
SS18-203ENST00000415083 CSTF2P33240 577 aaKnown RBP eCLIP9.34□□□□□ -0.91
SS18-203ENST00000415083 ERVFC1P60507 584 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 MFSD4BQ5TF39 518 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 GLCCI1Q86VQ1 547 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 TCEANCQ8N8B7 351 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 ST13P5Q8NFI4 369 aaPredicted RBP9.34□□□□□ -0.91
SS18-203ENST00000415083 HHIPL1Q96JK4 782 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 DMRTB1Q96MA1 342 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 UCK2Q9BZX2 261 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 NUAK2Q9H093 628 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 SNTG1Q9NSN8 517 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 MKLN1Q9UL63 735 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 KCNE3Q9Y6H6 103 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 HYKKA2RU49 373 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 PRRT4C9JH25 899 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 PLA2G10O15496 165 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 LCMT2O60294 686 aaKnown RBP9.34□□□□□ -0.91
SS18-203ENST00000415083 IFNW1P05000 195 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 ELFN1P0C7U0 828 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 ERGP11308 486 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 CXCR2P25025 360 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 CAV3P56539 151 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 CDC42P60953 191 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 INSL4Q14641 139 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 LIPKQ5VXJ0 399 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 TRIM40Q6P9F5 258 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 PODNL1Q6PEZ8 512 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 SLC44A2Q8IWA5 706 aaPredicted RBP9.34□□□□□ -0.91
SS18-203ENST00000415083 OR8D4Q8NGM9 314 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 C9orf43Q8TAL5 461 aaPredicted RBP9.34□□□□□ -0.91
SS18-203ENST00000415083 NELL2Q99435 816 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 TSSK6Q9BXA6 273 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 C3orf14Q9HBI5 128 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 TMA7Q9Y2S6 64 aaKnown RBP9.34□□□□□ -0.91
SS18-203ENST00000415083 MDC1Q14676 2089 aaKnown RBP9.34□□□□□ -0.91
SS18-203ENST00000415083 A0A1W2PQ09 198 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 FAM47E-STBD1D6RA91 191 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 ITGA2P17301 1181 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 DDCP20711 480 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 DGKGP49619 791 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 DMC1Q14565 340 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 SPHARQ15513 63 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 GAB4Q2WGN9 574 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 ZNF750Q32MQ0 723 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 SYT14P1Q58G82 188 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 OR2G6Q5TZ20 316 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 VASNQ6EMK4 673 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 C6orf120Q7Z4R8 191 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 SHISA5Q8N114 240 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 TIFAQ96CG3 184 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 WDFY2Q96P53 400 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 TEFMQ96QE5 360 aaKnown RBP9.34□□□□□ -0.91
SS18-203ENST00000415083 EFCAB11Q9BUY7 163 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 KCNK12Q9HB15 430 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 TIGARQ9NQ88 270 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 TXNL4BQ9NX01 149 aaKnown RBP9.34□□□□□ -0.91
SS18-203ENST00000415083 DKK3Q9UBP4 350 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 TMEM98Q9Y2Y6 226 aa9.34□□□□□ -0.91
SS18-203ENST00000415083 LOC110117498-PIK3R3F6TDL0 507 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 CCNKO75909 580 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 FGF18O76093 207 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 ZIC2O95409 532 aaPredicted RBP9.33□□□□□ -0.92
SS18-203ENST00000415083 ALDH1A1P00352 501 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 ADAP00813 363 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 CSF3P09919 207 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 IL7P13232 177 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 SOX18P35713 384 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 OR2B6P58173 313 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 MXD1Q05195 221 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 HSPB3Q12988 150 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 LARS2Q15031 903 aaKnown RBP9.33□□□□□ -0.92
SS18-203ENST00000415083 THOC7Q6I9Y2 204 aaKnown RBP9.33□□□□□ -0.92
SS18-203ENST00000415083 ZNF793Q6ZN11 406 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 VASH1Q7L8A9 365 aaPredicted RBP9.33□□□□□ -0.92
SS18-203ENST00000415083 SLC34A3Q8N130 599 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 KREMEN2Q8NCW0 462 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 REPS1Q96D71 796 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 ZG16BQ96DA0 208 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 MTERF3Q96E29 417 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 SENP5Q96HI0 755 aaPredicted RBP9.33□□□□□ -0.92
SS18-203ENST00000415083 YME1L1Q96TA2 773 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 LGR4Q9BXB1 951 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 MS4A8Q9BY19 250 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 EPHX3Q9H6B9 360 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 ABCB9Q9NP78 766 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 ZDHHC4Q9NPG8 344 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 DDX28Q9NUL7 540 aaKnown RBP9.33□□□□□ -0.92
SS18-203ENST00000415083 CLN6Q9NWW5 311 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 TBX21Q9UL17 535 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 CFL2Q9Y281 166 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 SEC14L5O43304 696 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 SLITRK5O94991 958 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 STATHP02808 62 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 S100A5P33763 92 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 EPHA5P54756 1037 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 RPS25P62851 125 aaKnown RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms