RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ATP6V1HQ9UI12 483 aa20.68■□□□□ 0.9
SHMT1-203ENST00000354098 SYNDIG1LA6NDD5 238 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 A6NL46 340 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 TBX19O60806 448 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 LAMP1P11279 417 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 COX7A2P14406 83 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 CCL11P51671 97 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 GPR143P51810 404 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 PGDP52209 483 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 AIMP2Q13155 320 aaKnown RBP20.67■□□□□ 0.9
SHMT1-203ENST00000354098 TERF2Q15554 542 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 LTB4RQ15722 352 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 CEBPEQ15744 281 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 PLAG1Q6DJT9 500 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 BORAQ6PGQ7 559 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 APLFQ8IW19 511 aaPredicted RBP20.67■□□□□ 0.9
SHMT1-203ENST00000354098 LRRC25Q8N386 305 aaPredicted RBP20.67■□□□□ 0.9
SHMT1-203ENST00000354098 C7orf57Q8NEG2 295 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 ADCY4Q8NFM4 1077 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 RIT1Q92963 219 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 MTERF3Q96E29 417 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 DPY30Q9C005 99 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 BRINP2Q9C0B6 783 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 SLAMF7Q9NQ25 335 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 ENTPD4Q9Y227 616 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 MYO1GB0I1T2 1018 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 DDAH2O95865 285 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 ATP1B1P05026 303 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 CT62P0C5K7 136 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 IDO1P14902 403 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 NT5EP21589 574 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 C21orf58P58505 322 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 R3HCC1LQ7Z5L2 792 aaKnown RBP20.67■□□□□ 0.9
SHMT1-203ENST00000354098 KIF2BQ8N4N8 673 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 B3GNT7Q8NFL0 401 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 DAZLQ92904 295 aaKnown RBP20.67■□□□□ 0.9
SHMT1-203ENST00000354098 ZNF764Q96H86 408 aaPredicted RBP20.67■□□□□ 0.9
SHMT1-203ENST00000354098 RILPQ96NA2 401 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 BBS4Q96RK4 519 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 PELOQ9BRX2 385 aaKnown RBP20.67■□□□□ 0.9
SHMT1-203ENST00000354098 OR8D2Q9GZM6 311 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 CXorf21Q9HAI6 301 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 GIMAP4Q9NUV9 329 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 ITPR1Q14643 2758 aa20.67■□□□□ 0.9
SHMT1-203ENST00000354098 C9JVG2 144 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 EFNA1P20827 205 aaPredicted RBP20.66■□□□□ 0.9
SHMT1-203ENST00000354098 ITGA3P26006 1051 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 SOX18P35713 384 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 ARFIP2P53365 341 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 RAPSNQ13702 412 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 ZNF267Q14586 743 aaPredicted RBP20.66■□□□□ 0.9
SHMT1-203ENST00000354098 RPS6KA2Q15349 733 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 EXT1Q16394 746 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 GSTA3Q16772 222 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 CPTPQ5TA50 214 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 KBTBD2Q8IY47 623 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 GALNT16Q8N428 558 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 APCDD1LQ8NCL9 501 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 OR14A16Q8NHC5 309 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 SLC2A12Q8TD20 617 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 STON2Q8WXE9 905 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 NCLNQ969V3 563 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 SENP5Q96HI0 755 aaPredicted RBP20.66■□□□□ 0.9
SHMT1-203ENST00000354098 THOC3Q96J01 351 aaKnown RBP20.66■□□□□ 0.9
SHMT1-203ENST00000354098 PPIEQ9UNP9 301 aaKnown RBP20.66■□□□□ 0.9
SHMT1-203ENST00000354098 EPG5Q9HCE0 2579 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 MED13Q9UHV7 2174 aa20.66■□□□□ 0.9
SHMT1-203ENST00000354098 GMNCA6NCL1 334 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 ITGB2P05107 769 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 SERPINA7P05543 415 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 ITGAMP11215 1152 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 ICAM2P13598 275 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 IL12AP29459 219 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 GALNSP34059 522 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 NCBP2P52298 156 aaKnown RBP eCLIP20.65■□□□□ 0.91e-6■■□□□ 14.2
SHMT1-203ENST00000354098 MGAT2Q10469 447 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 PRICKLE4Q2TBC4 344 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 FAM111BQ6SJ93 734 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 SAMD14Q8IZD0 417 aaPredicted RBP20.65■□□□□ 0.9
SHMT1-203ENST00000354098 OR9A2Q8NGT5 310 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 M1APQ8TC57 530 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 ZNF721Q8TF20 911 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 COQ8BQ96D53 544 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 CNPPD1Q9BV87 410 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 FAM107BQ9H098 131 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 GLIPR2Q9H4G4 154 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 SDR39U1Q9NRG7 319 aaPredicted RBP20.65■□□□□ 0.9
SHMT1-203ENST00000354098 KLHL14Q9P2G3 628 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 ZNF223Q9UK11 482 aaPredicted RBP20.65■□□□□ 0.9
SHMT1-203ENST00000354098 ERVK-19Q9WJR5 959 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 CROCCQ5TZA2 2017 aa20.65■□□□□ 0.9
SHMT1-203ENST00000354098 PDPK1O15530 556 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 DRD4P21917 467 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 MPIP34949 423 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 RPL3P39023 403 aaKnown RBP20.64■□□□□ 0.9
SHMT1-203ENST00000354098 SPRED3Q2MJR0 410 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 PGS1Q32NB8 556 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 LINC00303Q3SY05 128 aa20.64■□□□□ 0.9
SHMT1-203ENST00000354098 PDCD4Q53EL6 469 aaKnown RBP20.64■□□□□ 0.9
SHMT1-203ENST00000354098 GALNT12Q8IXK2 581 aa20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms