RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 LAPTM4AQ15012 233 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 SLC36A3Q495N2 470 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 EGFLAMQ63HQ2 1017 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 PTCRAQ6ISU1 281 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-219ENST00000620786 GID4Q8IVV7 300 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 LRRC15Q8TF66 581 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 SCRN2Q96FV2 425 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 SERINC2Q96SA4 455 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 UHRF1Q96T88 793 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-219ENST00000620786 KLF16Q9BXK1 252 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-219ENST00000620786 ZNF576Q9H609 170 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 ZNF69Q9UC07 566 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 EPHA6Q9UF33 1036 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 FARSAQ9Y285 508 aaKnown RBP10.88□□□□□ -0.67
CLIP1-219ENST00000620786 AHDC1Q5TGY3 1603 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-219ENST00000620786 A0A0J9YY10 115 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 SOCS2O14508 198 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 PRAMEF2O60811 474 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 CLPXO76031 633 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 FDXRP22570 491 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 NUDT1P36639 197 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 SLC6A11P48066 632 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 PHTF2Q8N3S3 785 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 SLC44A3Q8N4M1 653 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 TAS2R1Q9NYW7 299 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 SCAMP2O15127 329 aaKnown RBP10.88□□□□□ -0.67
CLIP1-219ENST00000620786 ZNF806P0C7X5 589 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 SLC2A2P11168 524 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-219ENST00000620786 CKMT2P17540 419 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 PRKACGP22612 351 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 S100A10P60903 97 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 RTL10Q7L3V2 364 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 OR5AR1Q8NGP9 310 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 RLN3Q8WXF3 142 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 TOX2Q96NM4 488 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 CCDC115Q96NT0 180 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 MNTQ99583 582 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 ZNF559Q9BR84 538 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 ACAD8Q9UKU7 415 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 SIT1Q9Y3P8 196 aa10.88□□□□□ -0.67
CLIP1-219ENST00000620786 BHMG1C9JSJ3 638 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 BCKDHAP12694 445 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 PVALBP20472 110 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 KCNC4Q03721 635 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 CRYZQ08257 329 aaKnown RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 IRF4Q15306 451 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 SF3B4Q15427 424 aaKnown RBP eCLIP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 PAQR7Q86WK9 346 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 FOXRED2Q8IWF2 684 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 TCEANCQ8N8B7 351 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 CEP76Q8TAP6 659 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 C15orf40Q8WUR7 153 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 SLC7A6OSQ96CW6 309 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 CD320Q9NPF0 282 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 EXOSC1Q9Y3B2 195 aaKnown RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 TEX13DA0A0J9YY54 714 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 SH3D21A4FU49 640 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 PLOD2O00469 737 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 KLF11O14901 512 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 ATE1O95260 518 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 FCER2P06734 321 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 ZNF888P0CJ79 500 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 ZNF28P17035 718 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 PRKCAP17252 672 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 TAS2R38P59533 333 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 DCDC1P59894 354 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 RPS26P62854 115 aaKnown RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 GAS6Q14393 721 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 LRRC26Q2I0M4 334 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 C18orf21Q32NC0 220 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 KCTD18Q6PI47 426 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 ZSWIM9Q86XI8 627 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 TOMM5Q8N4H5 51 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 SPRYD4Q8WW59 207 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 NANOS1Q8WY41 292 aaKnown RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 SGTBQ96EQ0 304 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 BMFQ96LC9 184 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 BARD1Q99728 777 aaKnown RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 IRF2BPLQ9H1B7 796 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 STARD5Q9NSY2 213 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 HRGP04196 525 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 C6orf120Q7Z4R8 191 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 SNX29P2Q8IUI4 249 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 EID2Q8N6I1 236 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 NPWQ8N729 165 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 CREB3L4Q8TEY5 395 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 RAB2BQ8WUD1 216 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 SHISA4Q96DD7 197 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 CCDC120Q96HB5 630 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 FAM129BQ96TA1 746 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 BAZ2AQ9UIF9 1905 aaKnown RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 NPIPB15A6NHN6 443 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-219ENST00000620786 H0YJX3 145 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 SOX30O94993 753 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 DIO3P55073 304 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 TUBB3Q13509 450 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 PTGR1Q14914 329 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 SEC23BQ15437 767 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 CDKN3Q16667 212 aa10.87□□□□□ -0.67
CLIP1-219ENST00000620786 DPPA4Q7L190 304 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms