RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PCDH17O14917 1159 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 CFLARO15519 480 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 PDPK1O15530 556 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 UMODP07911 640 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 SLC35E2P0CK97 266 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 CPMP14384 443 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 CD1EP15812 388 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 PORP16435 677 aaPredicted RBP13.46□□□□□ -0.25
UPF1-211ENST00000600868 MAOAP21397 527 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 FOLR3P41439 243 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 DGKQP52824 942 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 PHC1P78364 1004 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 ID2Q02363 134 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 STX4Q12846 297 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 MLC1Q15049 377 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 MAPRE2Q15555 327 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 NSDHLQ15738 373 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 ANXA8L1Q5VT79 327 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 CPZQ66K79 652 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 GK5Q6ZS86 529 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 SHISA6Q6ZSJ9 500 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 TREML1Q86YW5 311 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 FITM2Q8N6M3 262 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 VPS37AQ8NEZ2 397 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 TSLPQ969D9 159 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 CIDECQ96AQ7 238 aaPredicted RBP13.46□□□□□ -0.25
UPF1-211ENST00000600868 ERP27Q96DN0 273 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 SPDL1Q96EA4 605 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 OR52E6Q96RD3 313 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 BBS4Q96RK4 519 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 CRB3Q9BUF7 120 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 ALOXE3Q9BYJ1 711 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 SEMA3GQ9NS98 782 aa13.46□□□□□ -0.25
UPF1-211ENST00000600868 ACSS1Q9NUB1 689 aaPredicted RBP13.46□□□□□ -0.25
UPF1-211ENST00000600868 FAM120CQ9NX05 1096 aaKnown RBP13.46□□□□□ -0.25
UPF1-211ENST00000600868 CCDC88CQ9P219 2028 aa13.46□□□□□ -0.26
UPF1-211ENST00000600868 WDFY3Q8IZQ1 3526 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 PRSS51A0A1B0GVH4 220 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 A0A1W2PP18 115 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 CCDC154A6NI56 674 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 RNASET2O00584 256 aaKnown RBP13.45□□□□□ -0.26
UPF1-211ENST00000600868 SCN2BO60939 215 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 ALOX12BO75342 701 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 IGHEP01854 428 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 ATP1B1P05026 303 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 SNRPB2P08579 225 aaKnown RBP13.45□□□□□ -0.26
UPF1-211ENST00000600868 C8orf89P0DMQ9 161 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 CAPN3P20807 821 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 F8A1P23610 371 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 PRDX6P30041 224 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 NTSP30990 170 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 GALNSP34059 522 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 MPIP34949 423 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 FEN1P39748 380 aaKnown RBP13.45□□□□□ -0.26
UPF1-211ENST00000600868 FOXL2P58012 376 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 PLIN5Q00G26 463 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 LRRC74AQ0VAA2 488 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 SSPNQ14714 243 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 TERF2Q15554 542 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 TGIF1Q15583 401 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 ZNF750Q32MQ0 723 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 OR4F3Q6IEY1 312 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 FAM180BQ6P0A1 224 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 TMEM205Q6UW68 189 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 TRPM8Q7Z2W7 1104 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 TMEM151BQ8IW70 566 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 ST13P4Q8IZP2 240 aaPredicted RBP13.45□□□□□ -0.26
UPF1-211ENST00000600868 LRRC25Q8N386 305 aaPredicted RBP13.45□□□□□ -0.26
UPF1-211ENST00000600868 RP9Q8TA86 221 aaKnown RBP13.45□□□□□ -0.26
UPF1-211ENST00000600868 METTL21AQ8WXB1 218 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 KIAA1143Q96AT1 154 aaPredicted RBP13.45□□□□□ -0.26
UPF1-211ENST00000600868 NACC2Q96BF6 587 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 ZBED6CLQ96FA7 236 aaPredicted RBP13.45□□□□□ -0.26
UPF1-211ENST00000600868 PELOQ9BRX2 385 aaKnown RBP13.45□□□□□ -0.26
UPF1-211ENST00000600868 EFHD1Q9BUP0 239 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 SLC25A23Q9BV35 468 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 GLIPR2Q9H4G4 154 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.45□□□□□ -0.26
UPF1-211ENST00000600868 ANGPTL2Q9UKU9 493 aa13.45□□□□□ -0.26
UPF1-211ENST00000600868 A0A1W2PRB8 838 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 A0A1W2PS29 197 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 STT3AP46977 705 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 MANFP55145 182 aaKnown RBP13.44□□□□□ -0.26
UPF1-211ENST00000600868 DUSP2Q05923 314 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 GABPB1Q06547 395 aaPredicted RBP13.44□□□□□ -0.26
UPF1-211ENST00000600868 CLN3Q13286 438 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 CYLC2Q14093 348 aaPredicted RBP13.44□□□□□ -0.26
UPF1-211ENST00000600868 KRT72Q14CN4 511 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 TLR1Q15399 786 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 VPS26BQ4G0F5 336 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 TIGD2Q4W5G0 525 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 FAM69BQ5VUD6 431 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 ANKRD37Q7Z713 158 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 CCDC116Q8IYX3 515 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 ZFP28Q8NHY6 868 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 SNIP1Q8TAD8 396 aaKnown RBP13.44□□□□□ -0.26
UPF1-211ENST00000600868 SUN3Q8TAQ9 357 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 GATA6Q92908 595 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 VPS33AQ96AX1 596 aa13.44□□□□□ -0.26
UPF1-211ENST00000600868 CMTM5Q96DZ9 223 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms