RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 NMRAL1Q9HBL8 299 aa13.62□□□□□ -0.23
PNKP-202ENST00000593706 DNAJB12Q9NXW2 375 aaKnown RBP13.62□□□□□ -0.23
PNKP-202ENST00000593706 ALKBH4Q9NXW9 302 aa13.62□□□□□ -0.23
PNKP-202ENST00000593706 TUBA8Q9NY65 449 aaPredicted RBP13.62□□□□□ -0.23
PNKP-202ENST00000593706 NUDT4Q9NZJ9 180 aa13.62□□□□□ -0.23
PNKP-202ENST00000593706 CD274Q9NZQ7 290 aa13.62□□□□□ -0.23
PNKP-202ENST00000593706 Q9UFV3 132 aa13.62□□□□□ -0.23
PNKP-202ENST00000593706 MTRF1LQ9UGC7 380 aaKnown RBP13.62□□□□□ -0.23
PNKP-202ENST00000593706 RNF112Q9ULX5 631 aa13.62□□□□□ -0.23
PNKP-202ENST00000593706 A0A087X1B8 175 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 CCDC189A1A4V9 331 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 FAM47E-STBD1D6RA91 191 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 UBXN8O00124 270 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 DYRK3O43781 588 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 SUSD5O60279 629 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 ACSL3O95573 720 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 S100BP04271 92 aaPredicted RBP13.61□□□□□ -0.23
PNKP-202ENST00000593706 CD99P14209 185 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 PHBP35232 272 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 CASP2P42575 452 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 IST1P53990 364 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 KCNJ2P63252 427 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 DOC2AQ14183 400 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 SLC10A1Q14973 349 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 TBCCQ15814 346 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 HIST2H2ACQ16777 129 aaPredicted RBP13.61□□□□□ -0.23
PNKP-202ENST00000593706 SLC25A35Q3KQZ1 300 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 PAGE2BQ5JRK9 111 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 HIST2H2AA3Q6FI13 130 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 RAPH1Q70E73 1250 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 LRRC70Q7Z2Q7 622 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 TBC1D1Q86TI0 1168 aaPredicted RBP13.61□□□□□ -0.23
PNKP-202ENST00000593706 ZZZ3Q8IYH5 903 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 CHDHQ8NE62 594 aaPredicted RBP13.61□□□□□ -0.23
PNKP-202ENST00000593706 SRFBP1Q8NEF9 429 aaKnown RBP13.61□□□□□ -0.23
PNKP-202ENST00000593706 KIF18AQ8NI77 898 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 RHEBL1Q8TAI7 183 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 SLC22A8Q8TCC7 542 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 EXT2Q93063 718 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 MAPKAP1Q9BPZ7 522 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 POLDIP3Q9BY77 421 aaKnown RBP13.61□□□□□ -0.23
PNKP-202ENST00000593706 CD244Q9BZW8 370 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 LYRM4Q9HD34 91 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 ZNF490Q9ULM2 529 aaPredicted RBP13.61□□□□□ -0.23
PNKP-202ENST00000593706 ACOT9Q9Y305 439 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 L3MBTL1Q9Y468 752 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 ATG4BQ9Y4P1 393 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 KIAA1549Q9HCM3 1950 aa13.61□□□□□ -0.23
PNKP-202ENST00000593706 TRGV5A0A0B4J1U4 118 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 A0A1B0GVC2 190 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 PIGAP37287 484 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 ADH7P40394 386 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 MSH2P43246 934 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 SSR2P43308 183 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 SERPINB8P50452 374 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 PPP2R2AP63151 447 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 ASPHQ12797 758 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 LAPTM5Q13571 262 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 KRTAP21-3Q3LHN1 58 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 RTL6Q6ICC9 239 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 ARSKQ6UWY0 536 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 ACOT4Q8N9L9 421 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 IFT81Q8WYA0 676 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 MRRFQ96E11 262 aaKnown RBP13.6□□□□□ -0.23
PNKP-202ENST00000593706 DGAT2Q96PD7 388 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 CNPPD1Q9BV87 410 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 PRDM7Q9NQW5 492 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 B4GALT7Q9UBV7 327 aa13.6□□□□□ -0.23
PNKP-202ENST00000593706 BOKQ9UMX3 212 aaPredicted RBP13.6□□□□□ -0.23
PNKP-202ENST00000593706 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.6□□□□□ -0.23
PNKP-202ENST00000593706 A0A096LPK6 155 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 RTCAO00442 366 aaKnown RBP13.59□□□□□ -0.23
PNKP-202ENST00000593706 CCNT2O60583 730 aaKnown RBP13.59□□□□□ -0.23
PNKP-202ENST00000593706 HCN1O60741 890 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 ZNF354AO60765 605 aaPredicted RBP13.59□□□□□ -0.23
PNKP-202ENST00000593706 SH3BGRLO75368 114 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 KLHL2O95198 593 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 ETHE1O95571 254 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 PCNAP12004 261 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 GABRA1P14867 456 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 CPN2P22792 545 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 DLX5P56178 289 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 IRF8Q02556 426 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 FOXO1Q12778 655 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 CHIT1Q13231 466 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 MPEG1Q2M385 716 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 HYAL4Q2M3T9 481 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 AP5B1Q2VPB7 878 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 PRAMEF20Q5VT98 475 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 ZNF793Q6ZN11 406 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 LIX1LQ8IVB5 337 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 LIX1Q8N485 282 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 LRRN4CLQ8ND94 238 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 FAM13CQ8NE31 585 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 ZNF721Q8TF20 911 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 DCAKDQ8WVC6 231 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 NINJ1Q92982 152 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 RMND5BQ96G75 393 aaPredicted RBP13.59□□□□□ -0.23
PNKP-202ENST00000593706 POM121Q96HA1 1249 aa13.59□□□□□ -0.23
PNKP-202ENST00000593706 PAFAH2Q99487 392 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms