RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 KCMF1Q9P0J7 381 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 TMEM216Q9P0N5 145 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 VTI1BQ9UEU0 232 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 PLEKHB1Q9UF11 243 aaPredicted RBP7.55□□□□□ -1.2
VPS53-214ENST00000572607 TRPS1Q9UHF7 1281 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 PPT2Q9UMR5 302 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 PPIEQ9UNP9 301 aaKnown RBP7.55□□□□□ -1.2
VPS53-214ENST00000572607 SLC5A6Q9Y289 635 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 PCDHGB6Q9Y5F9 930 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 OTOGQ6ZRI0 2925 aa7.55□□□□□ -1.2
VPS53-214ENST00000572607 CCDC88CQ9P219 2028 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 DOPEY1Q5JWR5 2465 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 A0A0A6YYD5 115 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 A8MVJ9 347 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 COPEO14579 308 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 FGF17O60258 216 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 CDH16O75309 829 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 CRCPO75575 148 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 ITGA10O75578 1167 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 SLC25A12O75746 678 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 SLU7O95391 586 aaKnown RBP7.54□□□□□ -1.2
VPS53-214ENST00000572607 DDAH2O95865 285 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 THBS1P07996 1170 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 SP1P08047 785 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 MYL2P10916 166 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 ALOX15P16050 662 aaPredicted RBP7.54□□□□□ -1.2
VPS53-214ENST00000572607 TSPAN8P19075 237 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 IMPDH1P20839 514 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 TRHRP34981 398 aaPredicted RBP7.54□□□□□ -1.2
VPS53-214ENST00000572607 SLCO1A2P46721 670 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 HLCSP50747 726 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 CDH13P55290 713 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 NAA20P61599 178 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 ALDH6A1Q02252 535 aaKnown RBP7.54□□□□□ -1.2
VPS53-214ENST00000572607 ID2Q02363 134 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 MAPKAPK3Q16644 382 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 CCDC153Q494R4 210 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 CFAP157Q5JU67 520 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 ZNF678Q5SXM1 525 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 CCNYL2Q5T2Q4 361 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 OR52E8Q6IFG1 317 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 GPRIN3Q6ZVF9 776 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 TDRPQ86YL5 185 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 OR4N5Q8IXE1 308 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 CYP4Z2PQ8N1L4 340 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 APCDD1LQ8NCL9 501 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 MDS2Q8NDY4 140 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 METTL6Q8TCB7 284 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 THAP3Q8WTV1 239 aaPredicted RBP7.54□□□□□ -1.2
VPS53-214ENST00000572607 ASB15Q8WXK1 588 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 SCMH1Q96GD3 660 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 SIGLEC12Q96PQ1 595 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 TAAR6Q96RI8 345 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 NPAS2Q99743 824 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 SLX1AQ9BQ83 275 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 EPB41L4BQ9H329 900 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 DDX31Q9H8H2 851 aaKnown RBP7.54□□□□□ -1.2
VPS53-214ENST00000572607 BRF2Q9HAW0 419 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 ZBTB26Q9HCK0 441 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 HPF1Q9NWY4 346 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 SEC14L3Q9UDX4 400 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 MID2Q9UJV3 735 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 ADAM29Q9UKF5 820 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 GRID1Q9ULK0 1009 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 SLC12A4Q9UP95 1085 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 ERVK-11Q9UQG0 969 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 OSGIN2Q9Y236 505 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 KLF13Q9Y2Y9 288 aaPredicted RBP7.54□□□□□ -1.2
VPS53-214ENST00000572607 YARS2Q9Y2Z4 477 aaKnown RBP7.54□□□□□ -1.2
VPS53-214ENST00000572607 HRH3Q9Y5N1 445 aa7.54□□□□□ -1.2
VPS53-214ENST00000572607 SCN3AQ9NY46 2000 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 MYOCOSA0A1B0GUC4 107 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 A0A1B0GUH1 482 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 TLDC2A0PJX2 215 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 H3BQF6 201 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 KLRC4-KLRK1H3BQV0 150 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 TGFBR3LH3BV60 316 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 PROM1O43490 865 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 TMPRSS11DO60235 418 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 NME2P1O60361 137 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 DLX3O60479 287 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 ULK1O75385 1050 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 EEDO75530 441 aaKnown RBP7.53□□□□□ -1.2
VPS53-214ENST00000572607 NEURL1O76050 574 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 OR4F21O95013 312 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 UNC5CO95185 931 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 ETHE1O95571 254 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 ESRRBO95718 433 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 GPR75O95800 540 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 AIFM1O95831 613 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 PDYNP01213 254 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 SHBGP04278 402 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 ENO1P06733 434 aaKnown RBP7.53□□□□□ -1.2
VPS53-214ENST00000572607 KLK1P06870 262 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 SBK3P0C264 359 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 HSD3B1P14060 373 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 ZNF24P17028 368 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 NME2P22392 152 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 HSD3B2P26439 372 aa7.53□□□□□ -1.2
VPS53-214ENST00000572607 PIK3R1P27986 724 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms