RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CD97P48960 835 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 ZNF763Q0D2J5 394 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 C2orf80Q0P641 193 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 SERTAD2Q14140 314 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 ELAVL1Q15717 326 aaKnown RBP18.24■□□□□ 0.51
CLN3-225ENST00000566824 FAM71E1Q6IPT2 247 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 TRIM42Q8IWZ5 723 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 APCDD1LQ8NCL9 501 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 CLHC1Q8NHS4 586 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 FAM76AQ8TAV0 307 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 ELP5Q8TE02 316 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 NUDT8Q8WV74 236 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 SLC39A7Q92504 469 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 SMAD5Q99717 465 aaKnown RBP18.24■□□□□ 0.51
CLN3-225ENST00000566824 C1orf50Q9BV19 199 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 NUF2Q9BZD4 464 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 MMP25Q9NPA2 562 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 SLCO1B3Q9NPD5 702 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 INTS9Q9NV88 658 aaKnown RBP18.24■□□□□ 0.51
CLN3-225ENST00000566824 PTGFRNQ9P2B2 879 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 TUBD1Q9UJT1 453 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 SPTA1P02549 2419 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 C17orf105B2RV13 164 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 PRKNO60260 465 aaPredicted RBP18.23■□□□□ 0.51
CLN3-225ENST00000566824 GUCY1B2O75343 617 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 ERAL1O75616 437 aaKnown RBP18.23■□□□□ 0.51
CLN3-225ENST00000566824 BCKDHAP12694 445 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 TNNI3P19429 210 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 SOX18P35713 384 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 SOX11P35716 441 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 FEN1P39748 380 aaKnown RBP18.23■□□□□ 0.51
CLN3-225ENST00000566824 XKP51811 444 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 PGDP52209 483 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 EXT1Q16394 746 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 VWA5B1Q5TIE3 1220 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 TCTN3Q6NUS6 607 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 LINC00696Q6ZRV3 163 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 MAVSQ7Z434 540 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 B3GNT7Q8NFL0 401 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 OR4K14Q8NGD5 310 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 NCLNQ969V3 563 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 TUBGCP3Q96CW5 907 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 CNRIP1Q96F85 164 aaPredicted RBP18.23■□□□□ 0.51
CLN3-225ENST00000566824 ZNF681Q96N22 645 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 DGAT2Q96PD7 388 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 AKTIPQ9H8T0 292 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 MYNNQ9NPC7 610 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 PPIEQ9UNP9 301 aaKnown RBP18.23■□□□□ 0.51
CLN3-225ENST00000566824 A8MUI8 341 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 SNUPNO95149 360 aaKnown RBP18.23■□□□□ 0.51
CLN3-225ENST00000566824 CT62P0C5K7 136 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 CPMP14384 443 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 PIK3R1P27986 724 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 LACTB2Q53H82 288 aaPredicted RBP18.23■□□□□ 0.51
CLN3-225ENST00000566824 ANKRD26P1Q6NSI1 321 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 H3F3CQ6NXT2 135 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 ASB18Q6ZVZ8 466 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 WDR75Q8IWA0 830 aaKnown RBP18.23■□□□□ 0.51
CLN3-225ENST00000566824 CKAP2Q8WWK9 683 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 GFM2Q969S9 779 aaKnown RBP18.23■□□□□ 0.51
CLN3-225ENST00000566824 EXOSC8Q96B26 276 aaKnown RBP18.23■□□□□ 0.51
CLN3-225ENST00000566824 KLHL29Q96CT2 875 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 METTL2AQ96IZ6 378 aaKnown RBP18.23■□□□□ 0.51
CLN3-225ENST00000566824 PPP3R2Q96LZ3 170 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 TSSK3Q96PN8 268 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 FAIM2Q9BWQ8 316 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 SLC25A18Q9H1K4 315 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 KCNK13Q9HB14 408 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 CSAG2Q9Y5P2 127 aa18.23■□□□□ 0.51
CLN3-225ENST00000566824 COL6A6A6NMZ7 2263 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 SDHDO14521 159 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 ZNF195O14628 629 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 AKAP10O43572 662 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 C1QL1O75973 258 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 LRATO95237 230 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 SLC35E2P0CK97 266 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 ICAM2P13598 275 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 DRD2P14416 443 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 TERF2Q15554 542 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 LTB4RQ15722 352 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 ATP6AP1LQ52LC2 224 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 PTRH1Q86Y79 214 aaKnown RBP18.22■□□□□ 0.51
CLN3-225ENST00000566824 TICAM1Q8IUC6 712 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 CRLF3Q8IUI8 442 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 ST13P4Q8IZP2 240 aaPredicted RBP18.22■□□□□ 0.51
CLN3-225ENST00000566824 TMEM132CQ8N3T6 1108 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 LIX1Q8N485 282 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 SLC2A12Q8TD20 617 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 LRRC8CQ8TDW0 803 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 ZNF721Q8TF20 911 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 CCT7Q99832 543 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 OR8D2Q9GZM6 311 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 MEAF6Q9HAF1 191 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 UTS2RQ9UKP6 389 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 CLCA3PQ9Y6N3 262 aa18.22■□□□□ 0.51
CLN3-225ENST00000566824 TRBV11-1A0A0K0K1C0 115 aa18.21■□□□□ 0.51
CLN3-225ENST00000566824 OR10H2O60403 315 aa18.21■□□□□ 0.51
CLN3-225ENST00000566824 F10P00742 488 aa18.21■□□□□ 0.51
CLN3-225ENST00000566824 CLPSP04118 112 aa18.21■□□□□ 0.51
CLN3-225ENST00000566824 DDCP20711 480 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms