RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 IRX1P78414 480 aaPredicted RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 SF3A3Q12874 501 aaKnown RBP eCLIP16.04■□□□□ 0.161e-7■■■■□ 19.8
LIG1-204ENST00000542460 SPATA21Q7Z572 469 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 CPEB2Q7Z5Q1 589 aaKnown RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 MRGPREQ86SM8 312 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 RIMKLAQ8IXN7 391 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 KRTCAP2Q8N6L1 136 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 THAP4Q8WY91 577 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 EXOSC8Q96B26 276 aaKnown RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 C8orf44Q96CB5 159 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 PPCDCQ96CD2 204 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 RBM18Q96H35 190 aaKnown RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 MARK4Q96L34 752 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 PRPF18Q99633 342 aaKnown RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 ELAC2Q9BQ52 826 aaKnown RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 SLC35C2Q9NQQ7 365 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 SDR39U1Q9NRG7 319 aaPredicted RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 GIMAP4Q9NUV9 329 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 ATP6V1HQ9UI12 483 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 G3BP2Q9UN86 482 aaKnown RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 CELSR3Q9NYQ7 3312 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 A0A1W2PQ72 361 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 PEX12O00623 359 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 IFNA16P05015 189 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 SLC35E2P0CK97 266 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 PORP16435 677 aaPredicted RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 CSNK2A2P19784 350 aaPredicted RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 ITPKBP27987 946 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 STT3AP46977 705 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 STX1BP61266 288 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 PDCD4Q53EL6 469 aaKnown RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 SFT2D3Q587I9 215 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 ST13P4Q8IZP2 240 aaPredicted RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 OR11G2Q8NGC1 345 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 ZNF681Q96N22 645 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 CATSPER2Q96P56 530 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 MESP1Q9BRJ9 268 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 PELOQ9BRX2 385 aaKnown RBP16.04■□□□□ 0.16
LIG1-204ENST00000542460 P4HTMQ9NXG6 502 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 SH3BP4Q9P0V3 963 aa16.04■□□□□ 0.16
LIG1-204ENST00000542460 ACACAQ13085 2346 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 IGHV1-45A0A0A0MS14 117 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 MYOCOSA0A1B0GUC4 107 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 PRKAR1AP10644 381 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 CPMP14384 443 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 COX7A2P14406 83 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 NCF2P19878 526 aaPredicted RBP16.03■□□□□ 0.16
LIG1-204ENST00000542460 FEN1P39748 380 aaKnown RBP16.03■□□□□ 0.16
LIG1-204ENST00000542460 MRPL19P49406 292 aaKnown RBP16.03■□□□□ 0.16
LIG1-204ENST00000542460 CLNS1AP54105 237 aaKnown RBP16.03■□□□□ 0.16
LIG1-204ENST00000542460 NME5P56597 212 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 TMPRSS3P57727 454 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 PLIN5Q00G26 463 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 CDC20Q12834 499 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 CPTPQ5TA50 214 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 ATP1A1-AS1Q5TC04 95 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 NDUFAF7Q7L592 441 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 MIER2Q8N344 545 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 C10orf82Q8WW14 230 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 CNRIP1Q96F85 164 aaPredicted RBP16.03■□□□□ 0.16
LIG1-204ENST00000542460 DGAT2Q96PD7 388 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 ZNF700Q9H0M5 742 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 ADAP2Q9NPF8 381 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 PNO1Q9NRX1 252 aaKnown RBP16.03■□□□□ 0.16
LIG1-204ENST00000542460 ATAD3AQ9NVI7 634 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 ZIM2Q9NZV7 527 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 ENTPD4Q9Y227 616 aa16.03■□□□□ 0.16
LIG1-204ENST00000542460 CHD6Q8TD26 2715 aa16.02■□□□□ 0.16
LIG1-204ENST00000542460 NUP210LQ5VU65 1888 aa16.02■□□□□ 0.16
LIG1-204ENST00000542460 URB1O60287 2271 aaKnown RBP16.02■□□□□ 0.16
LIG1-204ENST00000542460 IGHV3-20A0A0C4DH32 117 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 K7ENP7 123 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 OR10H2O60403 315 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 SNX3O60493 162 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 SLC22A3O75751 556 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 COX6A1P12074 109 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 GALNSP34059 522 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 MPIP34949 423 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 ATP4BP51164 291 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 UFM1P61960 85 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 EEF1A2Q05639 463 aaKnown RBP16.02■□□□□ 0.15
LIG1-204ENST00000542460 ATP1A4Q13733 1029 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 TERF2Q15554 542 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 ELAVL1Q15717 326 aaKnown RBP16.02■□□□□ 0.15
LIG1-204ENST00000542460 CEBPEQ15744 281 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 ZNF750Q32MQ0 723 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 ANKRD26P1Q6NSI1 321 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 FAM180BQ6P0A1 224 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 INO80CQ6PI98 192 aaPredicted RBP16.02■□□□□ 0.15
LIG1-204ENST00000542460 LRRC25Q8N386 305 aaPredicted RBP16.02■□□□□ 0.15
LIG1-204ENST00000542460 NATD1Q8N6N6 113 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 GLB1L3Q8NCI6 653 aaPredicted RBP16.02■□□□□ 0.15
LIG1-204ENST00000542460 OR7A2PQ8NGA2 310 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 PPWD1Q96BP3 646 aaKnown RBP16.02■□□□□ 0.15
LIG1-204ENST00000542460 TESCQ96BS2 214 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 COQ8BQ96D53 544 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 BBS4Q96RK4 519 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 LPAR4Q99677 370 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 TUBB6Q9BUF5 446 aa16.02■□□□□ 0.15
LIG1-204ENST00000542460 POLHQ9Y253 713 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms