RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 EFEMP2O95967 443 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 IL1AP01583 271 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 LINC00271P0C7V0 271 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 HOXB6P17509 224 aaKnown RBP9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 S100PP25815 95 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 SLC6A1P30531 599 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 STARP49675 285 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 EEF1A1P68104 462 aaKnown RBP9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 DSC2Q02487 901 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 EEF1A2Q05639 463 aaKnown RBP9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 ELAVL2Q12926 359 aaKnown RBP9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 IL18Q14116 193 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 GPR176Q14439 515 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 EEF1A1P5Q5VTE0 462 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 FAM109BQ6ICB4 259 aaPredicted RBP9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 SHFQ7M4L6 423 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 RAB44Q7Z6P3 723 aaPredicted RBP9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 MSRB3Q8IXL7 192 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 PNPLA1Q8N8W4 532 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 UXS1Q8NBZ7 420 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 IPMKQ8NFU5 416 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 OR52K2Q8NGK3 314 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 SCRN2Q96FV2 425 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 SLC25A37Q9NYZ2 338 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 EXO1Q9UQ84 846 aaKnown RBP9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 ASB4Q9Y574 426 aa9.04□□□□□ -0.96
CTNNA1-243ENST00000540387 A0A1B0GVI7 797 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 TMEM82A0PJX8 343 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 WRBO00258 174 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 CXCL14O95715 111 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 S100A9P06702 114 aaKnown RBP9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 MYOGP15173 224 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 GABRB1P18505 474 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 LAG3P18627 525 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 LCP2Q13094 533 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 SHHQ15465 462 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 SLC14A2Q15849 920 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 UGT8Q16880 541 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 SLC39A12Q504Y0 691 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 USP39Q53GS9 565 aaKnown RBP9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 PLA1AQ53H76 456 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 HECTD2Q5U5R9 776 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 FAM180BQ6P0A1 224 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 CLEC20AQ6ZU45 233 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 RYBPQ8N488 228 aaPredicted RBP9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 GPR156Q8NFN8 814 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 PABPC5Q96DU9 382 aaKnown RBP9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 TSPAN17Q96FV3 270 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 OTUB1Q96FW1 271 aaPredicted RBP9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 CMSS1Q9BQ75 279 aaKnown RBP9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 NUSAP1Q9BXS6 441 aaKnown RBP9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 ACTR6Q9GZN1 396 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 KCNH6Q9H252 994 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 TMEM45AQ9NWC5 275 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 THUMPD1Q9NXG2 353 aaKnown RBP9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 SPHK1Q9NYA1 384 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 EPHA6Q9UF33 1036 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 SCP2D1Q9UJQ7 156 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 SSR3Q9UNL2 185 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 DENND4AQ7Z401 1863 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 MEIKINA0A087WXM9 373 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 MTMR11A4FU01 709 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 G3V3Q6 166 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 FFAR3O14843 346 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 PER2O15055 1255 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 GPR42O15529 346 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 RASGRP1O95267 797 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 G6PDP11413 515 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 OGNP20774 298 aaKnown RBP9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 PRDX3P30048 256 aaKnown RBP9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 VLDLRP98155 873 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 NRG1Q02297 640 aaPredicted RBP9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 LGALS3BPQ08380 585 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 C21orf62-AS1Q17RA5 79 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 SLC6A19Q695T7 634 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 RBMS3Q6XE24 437 aaKnown RBP9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 SPRED2Q7Z698 418 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 PDZD3Q86UT5 571 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 C10orf111Q8N326 155 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 C12orf45Q8N5I9 185 aaPredicted RBP9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 EIF4E3Q8N5X7 224 aaKnown RBP9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 MOSPD2Q8NHP6 518 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 C2CD4CQ8TF44 421 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 RNF139Q8WU17 664 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 ZNF599Q96NL3 588 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 SMOQ99835 787 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 C11orf84Q9BUA3 381 aaPredicted RBP9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 C1orf109Q9NX04 203 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 SPG21Q9NZD8 308 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 COMMD3Q9UBI1 195 aa9.03□□□□□ -0.96
CTNNA1-243ENST00000540387 LOC105369274A0A096LPK9 316 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 A0A1B0GTQ1 180 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 GPR171O14626 319 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 TO15178 435 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 ADAM12O43184 909 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 SOD2P04179 222 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 LCP1P13796 627 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 MTHFD2P13995 350 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 LCN1P31025 176 aa9.02□□□□□ -0.97
CTNNA1-243ENST00000540387 SDC2P34741 201 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms