RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 STT3AP46977 705 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 TRPC1P48995 793 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 HNRNPH2P55795 449 aaKnown RBP13.11□□□□□ -0.31
CPSF1-201ENST00000526271 MRPS25P82663 173 aaKnown RBP13.11□□□□□ -0.31
CPSF1-201ENST00000526271 CRYZQ08257 329 aaKnown RBP13.11□□□□□ -0.31
CPSF1-201ENST00000526271 MGAT5Q09328 741 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 DLG1Q12959 904 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 FBXL19-AS1Q494R0 122 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 ACSF3Q4G176 576 aaPredicted RBP13.11□□□□□ -0.31
CPSF1-201ENST00000526271 DCST1Q5T197 706 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 TMEM64Q6YI46 380 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 LRRN4CLQ8ND94 238 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 KIAA1191Q96A73 305 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 SPACA9Q96E40 222 aaPredicted RBP13.11□□□□□ -0.31
CPSF1-201ENST00000526271 RHOJQ9H4E5 214 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 PLEKHF2Q9H8W4 249 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 RRAGDQ9NQL2 400 aaPredicted RBP13.11□□□□□ -0.31
CPSF1-201ENST00000526271 DNAJC11Q9NVH1 559 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 MRPS33Q9Y291 106 aaKnown RBP13.11□□□□□ -0.31
CPSF1-201ENST00000526271 ARID1AO14497 2285 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 CSPG4Q6UVK1 2322 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 ANKDD1BA6NHY2 528 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 TRIM3O75382 744 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-201ENST00000526271 P04436 131 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 FBXO45P0C2W1 286 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 HIST1H1TP22492 207 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-201ENST00000526271 CASP2P42575 452 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 STX4Q12846 297 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 CHIT1Q13231 466 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 MORF4L2Q15014 288 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 EFTUD2Q15029 972 aaKnown RBP eCLIP13.1□□□□□ -0.314e-13■■■■■ 32.1
CPSF1-201ENST00000526271 FLYWCH1Q4VC44 716 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 WLSQ5T9L3 541 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 OPN5Q6U736 354 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 PAMR1Q6UXH9 720 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 LAS2Q8IYD9 372 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 KRT78Q8N1N4 520 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 FBXW8Q8N3Y1 598 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 ZNF441Q8N8Z8 693 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 PDPRQ8NCN5 879 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 BBOF1Q8ND07 529 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 FBXO36Q8NEA4 188 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 NEIL3Q8TAT5 605 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 SARAFQ96BY9 339 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 MBD6Q96DN6 1003 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 PTCD3Q96EY7 689 aaKnown RBP13.1□□□□□ -0.31
CPSF1-201ENST00000526271 ALPK1Q96QP1 1244 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 PITHD1Q9GZP4 211 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-201ENST00000526271 OR51B5Q9H339 312 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 UBQLN3Q9H347 655 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 ZFP64Q9NPA5 681 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 ACKR4Q9NPB9 350 aa13.1□□□□□ -0.31
CPSF1-201ENST00000526271 PABPN1LA6NDY0 278 aaKnown RBP13.09□□□□□ -0.31
CPSF1-201ENST00000526271 EFCAB8A8MWE9 144 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 SEC31AO94979 1220 aaKnown RBP13.09□□□□□ -0.31
CPSF1-201ENST00000526271 TGFB1P01137 390 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 TNNI3P19429 210 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 UQCRC1P31930 480 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 MSH2P43246 934 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 CBLBQ13191 982 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 DUSP8Q13202 625 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 SERTAD2Q14140 314 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 DAZAP2Q15038 168 aaPredicted RBP13.09□□□□□ -0.31
CPSF1-201ENST00000526271 EBPQ15125 230 aaKnown RBP13.09□□□□□ -0.31
CPSF1-201ENST00000526271 ZKSCAN8Q15776 578 aaPredicted RBP13.09□□□□□ -0.31
CPSF1-201ENST00000526271 FAM219BQ5XKK7 198 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 SLC22A10Q63ZE4 541 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 DESI1Q6ICB0 168 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 C8orf74Q6P047 294 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 Q71RC1 249 aaPredicted RBP13.09□□□□□ -0.31
CPSF1-201ENST00000526271 UBXN10Q96LJ8 280 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 KCNC2Q96PR1 638 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 TIMP4Q99727 224 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 TBCDQ9BTW9 1192 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 LDAHQ9H6V9 325 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 WWOXQ9NZC7 414 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 SNX24Q9Y343 169 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 UTP11Q9Y3A2 253 aaKnown RBP13.09□□□□□ -0.31
CPSF1-201ENST00000526271 PCDHGB3Q9Y5G1 929 aa13.09□□□□□ -0.31
CPSF1-201ENST00000526271 TMPRSS11DO60235 418 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 STK16O75716 305 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 SLU7O95391 586 aaKnown RBP13.08□□□□□ -0.32
CPSF1-201ENST00000526271 EPPINO95925 133 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 BMP5P22003 454 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 TACR1P25103 407 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 HOXC12P31275 282 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 SLCO1A2P46721 670 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 AGFG1P52594 562 aaKnown RBP13.08□□□□□ -0.32
CPSF1-201ENST00000526271 SLC37A1P57057 533 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 HERVK_113P63132 956 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 ERVK-8P63133 956 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 SLC7A5Q01650 507 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 TBCCQ15814 346 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 PDK4Q16654 411 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 MRM1Q6IN84 353 aaKnown RBP13.08□□□□□ -0.32
CPSF1-201ENST00000526271 PLXDC2Q6UX71 529 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 GPSM1Q86YR5 675 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 PDIK1LQ8N165 341 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 SNX31Q8N9S9 440 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 CHDHQ8NE62 594 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms