RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 RPS6KA6Q9UK32 745 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 OR10H1Q9Y4A9 318 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 PCDHB7Q9Y5E2 793 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 SNX11Q9Y5W9 270 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 G3V3Q6 166 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 GLUD1P00367 558 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 H2AFB1P0C5Y9 115 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 H2AFB2P0C5Z0 115 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 HPGDP15428 266 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 CTPS1P17812 591 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 TLE2Q04725 743 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 DUSP4Q13115 394 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 CAPSQ13938 189 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 AMHR2Q16671 573 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 C3orf38Q5JPI3 329 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 LYPD4Q6UWN0 246 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 NUDT18Q6ZVK8 323 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 MAMDC2Q7Z304 686 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 STAG3L4Q8TBR4 150 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 C11orf24Q96F05 449 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 FCRL1Q96LA6 429 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 ZYG11BQ9C0D3 744 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 TREX1Q9NSU2 369 aa11.5□□□□□ -0.57
LIMCH1-213ENST00000511496 SCN9AQ15858 1988 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 OR6C74A6NCV1 312 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 LRIT2A6NDA9 550 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 FAM170BA6NMN3 283 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 HCRTO43612 131 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 SEMA7AO75326 666 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 BPIP17213 487 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 PTBP1P26599 531 aaKnown RBP eCLIP11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 ITGA1P56199 1179 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 SLC3A1Q07837 685 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 CHAF1BQ13112 559 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 ATAT1Q5SQI0 421 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 IL20RBQ6UXL0 311 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 LAPTM4BQ86VI4 370 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 CILP2Q8IUL8 1156 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 CHST14Q8NCH0 376 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 TRPV1Q8NER1 839 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 AKR7LQ8NHP1 331 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 SLC35F5Q8WV83 523 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 PAWRQ96IZ0 340 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 KCNH6Q9H252 994 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 RPF1Q9H9Y2 349 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 SLC6A20Q9NP91 592 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 HEBP1Q9NRV9 189 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 ING1Q9UK53 422 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 CLEC4AQ9UMR7 237 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 GSTK1Q9Y2Q3 226 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 COL5A2P05997 1499 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 ZNF729A6NN14 1252 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 CA12O43570 354 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 GNRH1P01148 92 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 ELK1P19419 428 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 CDKN2CP42773 168 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 OR1E2P47887 323 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 ABRAXAS2Q15018 415 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 GUCA2BQ16661 112 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 MTFR2Q6P444 385 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 ZNF551Q7Z340 670 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 LGI4Q8N135 537 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 TRMT10AQ8TBZ6 339 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 WDR89Q96FK6 387 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 PRMT6Q96LA8 375 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 RCOR3Q9P2K3 495 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 ACAD8Q9UKU7 415 aa11.49□□□□□ -0.57
LIMCH1-213ENST00000511496 IFRD1O00458 451 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 TERTO14746 1132 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 CASC3O15234 703 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 F12P00748 615 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 FBP1P09467 338 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 CTNNB1P35222 781 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 ARSDP51689 593 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 KIAA0040Q15053 153 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 OR10K1Q8NGX5 313 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 RXFP4Q8TDU9 374 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 HSD17B8Q92506 261 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 MEGF10Q96KG7 1140 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 SOSTQ9BQB4 213 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 C7orf50Q9BRJ6 194 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 JAM3Q9BX67 310 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 TFB2MQ9H5Q4 396 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 IMP3Q9NV31 184 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 NPEPPSL1A6NEC2 478 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 LRATO95237 230 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 S1PR4O95977 384 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 CD3GP09693 182 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 ANKRD34CP0C6C1 535 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 TFPIP10646 304 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 DDX6P26196 483 aaKnown RBP eCLIP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 AFF1P51825 1210 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 SPIBQ01892 262 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 ABHD18Q0P651 414 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 NCF4Q15080 339 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 PGM5Q15124 567 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 PAQR3Q6TCH7 311 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 NAA40Q86UY6 237 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 GATAD2BQ8WXI9 593 aa11.48□□□□□ -0.57
LIMCH1-213ENST00000511496 RAB7BQ96AH8 199 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms