RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 TIMP3P35625 211 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 STT3AP46977 705 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 ASPHQ12797 758 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 FOXD4Q12950 439 aaPredicted RBP11.99□□□□□ -0.49
HDAC6-227ENST00000485102 DOC2AQ14183 400 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 FLYWCH1Q4VC44 716 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 TMEM35AQ53FP2 167 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 PAGE2BQ5JRK9 111 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 SULT1C3Q6IMI6 304 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 ZNF793Q6ZN11 406 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 WDR53Q7Z5U6 358 aaPredicted RBP11.99□□□□□ -0.49
HDAC6-227ENST00000485102 ULK2Q8IYT8 1036 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 NEIL3Q8TAT5 605 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 SLC22A8Q8TCC7 542 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 RNASE6Q93091 150 aaKnown RBP11.99□□□□□ -0.49
HDAC6-227ENST00000485102 SPACA9Q96E40 222 aaPredicted RBP11.99□□□□□ -0.49
HDAC6-227ENST00000485102 SH3GL2Q99962 352 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 MAPKAP1Q9BPZ7 522 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 GPATCH1Q9BRR8 931 aaKnown RBP11.99□□□□□ -0.49
HDAC6-227ENST00000485102 TMEM79Q9BSE2 394 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 CNPPD1Q9BV87 410 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 MS4A8Q9BY19 250 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 NSMCE4AQ9NXX6 385 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 PTBP2Q9UKA9 531 aaKnown RBP11.99□□□□□ -0.49
HDAC6-227ENST00000485102 CHMP2BQ9UQN3 213 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 SPACA6W5XKT8 324 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 NCKAP5O14513 1909 aa11.99□□□□□ -0.49
HDAC6-227ENST00000485102 HRNRQ86YZ3 2850 aaPredicted RBP11.98□□□□□ -0.49
HDAC6-227ENST00000485102 LRRC3CA6NJW4 275 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 DVL2O14641 736 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 GOSR1O95249 250 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 C1QAP02745 245 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 RFPL3SP0C7P2 107 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 SERPINB1P30740 379 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 PIGAP37287 484 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 ASCL1P50553 236 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 ARFIP1P53367 373 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 ADAM8P78325 824 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 POU4F1Q01851 419 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 GUCY2DQ02846 1103 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 ZNF460Q14592 562 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 SLMAPQ14BN4 828 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 CEBPEQ15744 281 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 HIST2H2ACQ16777 129 aaPredicted RBP11.98□□□□□ -0.49
HDAC6-227ENST00000485102 HIST2H2AA3Q6FI13 130 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 ADNP2Q6IQ32 1131 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 POMZP3Q6PJE2 187 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 CDC20BQ86Y33 519 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 C9orf40Q8IXQ3 194 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 LAS2Q8IYD9 372 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 RELL2Q8NC24 303 aaPredicted RBP11.98□□□□□ -0.49
HDAC6-227ENST00000485102 PDPRQ8NCN5 879 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 GOT1L1Q8NHS2 421 aaPredicted RBP11.98□□□□□ -0.49
HDAC6-227ENST00000485102 ZNF473Q8WTR7 871 aaKnown RBP11.98□□□□□ -0.49
HDAC6-227ENST00000485102 UBE2E3Q969T4 207 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 CFAP36Q96G28 342 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 RBM18Q96H35 190 aaKnown RBP11.98□□□□□ -0.49
HDAC6-227ENST00000485102 FBXL20Q96IG2 436 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 ART5Q96L15 291 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 LRRC1Q9BTT6 524 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 TRIM31Q9BZY9 425 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.98□□□□□ -0.494e-7■■■■■ 44
HDAC6-227ENST00000485102 MS4A12Q9NXJ0 267 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 SNX24Q9Y343 169 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 CHCHD2Q9Y6H1 151 aaPredicted RBP11.98□□□□□ -0.49
HDAC6-227ENST00000485102 DNHD1Q96M86 4753 aa11.98□□□□□ -0.49
HDAC6-227ENST00000485102 MYOCOSA0A1B0GUC4 107 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 E7ESA3 106 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 TP73O15350 636 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 DYRK3O43781 588 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 FGF17O60258 216 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 FBXO45P0C2W1 286 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 EPORP19235 508 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 SERPINB3P29508 390 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 GALNSP34059 522 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 RPL21P46778 160 aaKnown RBP11.97□□□□□ -0.49
HDAC6-227ENST00000485102 ATP6V0D1P61421 351 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 SF3B4Q15427 424 aaKnown RBP eCLIP11.97□□□□□ -0.493e-9■■■■□ 26.1
HDAC6-227ENST00000485102 NTRK2Q16620 822 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 PDK4Q16654 411 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 AP5B1Q2VPB7 878 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 TBCELQ5QJ74 424 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 HP1BP3Q5SSJ5 553 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-227ENST00000485102 CHSY3Q70JA7 882 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 GPSM1Q86YR5 675 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 TANKQ92844 425 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 EXO5Q9H790 373 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 ALKBH4Q9NXW9 302 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 WWOXQ9NZC7 414 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 CNOT11Q9UKZ1 510 aaKnown RBP11.97□□□□□ -0.49
HDAC6-227ENST00000485102 CBLCQ9ULV8 474 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 PLEKHA6Q9Y2H5 1048 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 TSC22D4Q9Y3Q8 395 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 NSD1Q96L73 2696 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-227ENST00000485102 ARID1AO14497 2285 aa11.97□□□□□ -0.49
HDAC6-227ENST00000485102 NCF1BA6NI72 391 aaPredicted RBP11.96□□□□□ -0.49
HDAC6-227ENST00000485102 NCF1CA8MVU1 366 aaPredicted RBP11.96□□□□□ -0.49
HDAC6-227ENST00000485102 TRIM3O75382 744 aaPredicted RBP11.96□□□□□ -0.49
HDAC6-227ENST00000485102 EPXP11678 715 aa11.96□□□□□ -0.49
HDAC6-227ENST00000485102 NCF1P14598 390 aaPredicted RBP11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms