RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 PDE7AQ13946 482 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 TERF2Q15554 542 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 CEBPEQ15744 281 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 ZNF750Q32MQ0 723 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 GALNTL6Q49A17 601 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 PLAG1Q6DJT9 500 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 OGFOD2Q6N063 350 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 BORAQ6PGQ7 559 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 PAPD4Q6PIY7 484 aaKnown RBP11.61□□□□□ -0.55
USP40-205ENST00000430158 EPGNQ6UW88 154 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 IKBIPQ70UQ0 350 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 ARFGAP2Q8N6H7 521 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 EXD3Q8N9H8 876 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 TUBGCP3Q96CW5 907 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 CNRIP1Q96F85 164 aaPredicted RBP11.61□□□□□ -0.55
USP40-205ENST00000430158 ZNF764Q96H86 408 aaPredicted RBP11.61□□□□□ -0.55
USP40-205ENST00000430158 FER1L6-AS2Q96M78 137 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 TUBB6Q9BUF5 446 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 WDR55Q9H6Y2 383 aaPredicted RBP11.61□□□□□ -0.55
USP40-205ENST00000430158 ZNF160Q9HCG1 818 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 RIC8BQ9NVN3 520 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 EHD3Q9NZN3 535 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 C19orf25Q9UFG5 118 aaPredicted RBP11.61□□□□□ -0.55
USP40-205ENST00000430158 BAIAP2L1Q9UHR4 511 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 NBASA2RRP1 2371 aa11.61□□□□□ -0.55
USP40-205ENST00000430158 PRRC2CQ9Y520 2896 aaKnown RBP11.61□□□□□ -0.55
USP40-205ENST00000430158 SAGE2PA6NJ88 616 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 ANKRD28O15084 1053 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 MYO1DO94832 1006 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 DDAH2O95865 285 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 SERPINA7P05543 415 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 ALDOCP09972 364 aaKnown RBP11.6□□□□□ -0.55
USP40-205ENST00000430158 SLC35E2P0CK97 266 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 KITP10721 976 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 DDCP20711 480 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 GALNSP34059 522 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 MDH1P40925 334 aaKnown RBP11.6□□□□□ -0.55
USP40-205ENST00000430158 DIO3P55073 304 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 C21orf58P58505 322 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 SLC26A5P58743 744 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 ERVK-8P63133 956 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 GUCY1A3Q02108 690 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 MGAT2Q10469 447 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 AIMP2Q13155 320 aaKnown RBP11.6□□□□□ -0.55
USP40-205ENST00000430158 BIKQ13323 160 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 SERTAD2Q14140 314 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 ELAVL1Q15717 326 aaKnown RBP11.6□□□□□ -0.55
USP40-205ENST00000430158 MPEG1Q2M385 716 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 SLC9B1Q4ZJI4 515 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 ATP6AP1LQ52LC2 224 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 IL23RQ5VWK5 629 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 H3F3CQ6NXT2 135 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 FAM47EQ6ZV65 393 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 CRLF3Q8IUI8 442 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 RIMKLAQ8IXN7 391 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 APCDD1LQ8NCL9 501 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 OR4K14Q8NGD5 310 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 ACTRT2Q8TDY3 377 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 ELP5Q8TE02 316 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 NUDT8Q8WV74 236 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 DYDC1Q8WWB3 177 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 PPP1R36Q96LQ0 422 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 C1orf50Q9BV19 199 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 FAIM2Q9BWQ8 316 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 SEMA4CQ9C0C4 833 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 WDR41Q9HAD4 459 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 ADAP2Q9NPF8 381 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 ATP13A2Q9NQ11 1180 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 PFDN4Q9NQP4 134 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 ZNF223Q9UK11 482 aaPredicted RBP11.6□□□□□ -0.55
USP40-205ENST00000430158 USH1CQ9Y6N9 552 aa11.6□□□□□ -0.55
USP40-205ENST00000430158 RP1L1Q8IWN7 2480 aaPredicted RBP11.59□□□□□ -0.55
USP40-205ENST00000430158 NSG1A0A0A6YYJ2 146 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 SYNDIG1LA6NDD5 238 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 TRPC5OSA6NMA1 111 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 A8MUA0 341 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 MYO1GB0I1T2 1018 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 TCP11X1B4DZS4 312 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 VPS4BO75351 444 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 TGDSO95455 350 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 CLPSP04118 112 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 IGKV3-11P04433 115 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 G6PDP11413 515 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 PRPS2P11908 318 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 CPMP14384 443 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 S1PR1P21453 382 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 EPHA3P29320 983 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 SOX11P35716 441 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 XKP51811 444 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 RRADP55042 308 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 POLE2P56282 527 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 C2orf80Q0P641 193 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 STX4Q12846 297 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 PTGR1Q14914 329 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 ZNF385BQ569K4 471 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 PARP9Q8IXQ6 854 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 ST13P4Q8IZP2 240 aaPredicted RBP11.59□□□□□ -0.55
USP40-205ENST00000430158 ARMC10Q8N2F6 343 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 GALNT16Q8N428 558 aa11.59□□□□□ -0.55
USP40-205ENST00000430158 LIX1Q8N485 282 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms