RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 CRYABP02511 175 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 FCGR2AP12318 317 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 VCANP13611 3396 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 F3P13726 295 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 PKMP14618 531 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 FOXN2P32314 431 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 CA5AP35218 305 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 NSG1P42857 185 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 MAGEA3P43357 314 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 FASLGP48023 281 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 PRLHRP49683 370 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 MVDP53602 400 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 CTSCP53634 463 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 NR1H2P55055 460 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 KRTAP10-11P60412 298 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 PLOD1Q02809 727 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 CKAP4Q07065 602 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 RPA4Q13156 261 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ALKBH1Q13686 389 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 NR1D2Q14995 579 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 MORF4L2Q15014 288 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 BAK1Q16611 211 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 WHAMMP3Q1A5X7 153 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 AP5B1Q2VPB7 878 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 FASTKD1Q53R41 847 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 DNAJC21Q5F1R6 531 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 FNBP1LQ5T0N5 605 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 RNASEH2BQ5TBB1 312 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ANKRD22Q5VYY1 191 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 KIAA0930Q6ICG6 404 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 GUSBP11Q6P575 273 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ZNF549Q6P9A3 640 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 CCNI2Q6ZMN8 369 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ZNF534Q76KX8 674 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 SDCCAG8Q86SQ7 713 aaPredicted RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 TMEM135Q86UB9 458 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 LRRC6Q86X45 466 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 TRAPPC5Q8IUR0 188 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 SFRP1Q8N474 314 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 LSM14AQ8ND56 463 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 SPATA4Q8NEY3 305 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 OR13J1Q8NGT2 312 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 OR2L2Q8NH16 312 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 MAPK15Q8TD08 544 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 LRRC39Q96DD0 335 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 SGF29Q96ES7 293 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 NAT9Q9BTE0 207 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 CARD6Q9BX69 1037 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 LRRN3Q9H3W5 708 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 FAM96AQ9H5X1 160 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 STN1Q9H668 368 aaKnown RBP2.39□□□□□ -2.03
VPS13A-208ENST00000423463 VPS37BQ9H9H4 285 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 UCK1Q9HA47 277 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 TREX1Q9NSU2 369 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ADAMTS9Q9P2N4 1935 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 UPB1Q9UBR1 384 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 SLC23A2Q9UGH3 650 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 SLC2A6Q9UGQ3 507 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ASIC3Q9UHC3 531 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 KCNK6Q9Y257 313 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 RNF215Q9Y6U7 377 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 FAM169AQ9Y6X4 670 aa2.39□□□□□ -2.03
VPS13A-208ENST00000423463 ANKRD36A6QL64 1941 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 COL5A1P20908 1838 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 TMEM8BA6NDV4 472 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 OR2AG2A6NM03 316 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 PDZK1P1A8MUH7 402 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 HMGB1P1B2RPK0 211 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 B4E171 279 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 PRMT5O14744 637 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 LIN7AO14910 233 aaPredicted RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 TTI1O43156 1089 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 PRPF4O43172 522 aaKnown RBP eCLIP2.38□□□□□ -2.035e-6■□□□□ 8.5
VPS13A-208ENST00000423463 NDUFS3O75489 264 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 TMEM63AO94886 807 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 VAPBO95292 243 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 TTC4O95801 387 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 FTH1P02794 183 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 OR56A5P0C7T3 313 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 OGNP20774 298 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 RPS3P23396 243 aaKnown RBP eCLIP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 GSTM2P28161 218 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 NMBRP28336 390 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 TSPAN7P41732 249 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CD151P48509 253 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 TTPAP49638 278 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 DRG2P55039 364 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 MAZP56270 477 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 UBE2IP63279 158 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CCL7P80098 99 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 PTGR1Q14914 329 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 ISXQ2M1V0 245 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 ANKRD20A4Q4UJ75 823 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 RUNDC3AQ59EK9 446 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 HES3Q5TGS1 186 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CAPRIN2Q6IMN6 1127 aaKnown RBP2.38□□□□□ -2.03
VPS13A-208ENST00000423463 NEPROQ6NW34 567 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 CASC4Q6P4E1 433 aa2.38□□□□□ -2.03
VPS13A-208ENST00000423463 PACS1Q6VY07 963 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms