RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 KLF1Q13351 362 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 GANABQ14697 944 aaKnown RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 MLC1Q15049 377 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 GPR68Q15743 365 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SPRYD7Q5W111 196 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 FAM199XQ6PEV8 388 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SSX6Q7RTT6 188 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 MAMDC2Q7Z304 686 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 ASPGQ86U10 573 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 TICAM1Q8IUC6 712 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 TCEANCQ8N8B7 351 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 ARL14EPQ8N8R7 260 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 TSTD1Q8NFU3 115 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF689Q96CS4 500 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 PRRT1Q99946 306 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 HERPUD2Q9BSE4 406 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 RXFP3Q9NSD7 469 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 MED17Q9NVC6 651 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 ABRACLQ9P1F3 81 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 NME7Q9Y5B8 376 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 C2orf71A6NGG8 1288 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 ACOT7O00154 380 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SNNO75324 88 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SEC14L2O76054 403 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 MAP2K4P45985 399 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 HTR3AP46098 478 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 THBS3P49746 956 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 INHBCP55103 352 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 VSX2P58304 361 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 CREB5Q02930 508 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 PMS2P3Q13401 168 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 NTRK2Q16620 822 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SFT2D3Q587I9 215 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 MAP1SQ66K74 1059 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 GTF2IRD2BQ6EKJ0 949 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 GTF2IRD2Q86UP8 949 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SAMD12Q8N8I0 201 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 OR13C4Q8NGS5 318 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 OR13J1Q8NGT2 312 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 TERB2Q8NHR7 220 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 KIAA1143Q96AT1 154 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 TMED9Q9BVK6 235 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 STRADBQ9C0K7 418 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 RNF38Q9H0F5 515 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 CARS2Q9HA77 564 aaKnown RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 FAM118AQ9NWS6 357 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 GALPQ9UBC7 116 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SLC6A14Q9UN76 642 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SLC22A14Q9Y267 594 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 GPR37L1O60883 481 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 IGHEP01854 428 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 IFNGR1P15260 489 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 MAGP20916 626 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 ECI1P42126 302 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 MAGEA6P43360 314 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 RGS19P49795 217 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 CEBPGP53567 150 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 CLRN1P58418 232 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 IRF9Q00978 393 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 DUSP7Q16829 419 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 TIGD5Q53EQ6 642 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SDHAF4Q5VUM1 108 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 LYSMD3Q7Z3D4 306 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 FAM129CQ86XR2 697 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 RASGRP3Q8IV61 690 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 PYROXD2Q8N2H3 581 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 LRRC25Q8N386 305 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 SYNPOQ8N3V7 929 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 PAPD5Q8NDF8 572 aaKnown RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 THEM6Q8WUY1 208 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 IRF7Q92985 503 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 TMEM68Q96MH6 324 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 WRAP53Q9BUR4 548 aaKnown RBP5.85□□□□□ -1.47
SCN1A-203ENST00000409050 METTL7AQ9H8H3 244 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 ENPP4Q9Y6X5 453 aa5.85□□□□□ -1.47
SCN1A-203ENST00000409050 A0A075B6Q4 140 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 FBP2O00757 339 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 GABBR2O75899 941 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 RAB40ALP0C0E4 278 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 RAB3BP20337 219 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 MC1RQ01726 317 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 ARHGAP19Q14CB8 494 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 MEP1AQ16819 746 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF805Q5CZA5 627 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 AADACL4Q5VUY2 407 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 TMEM173Q86WV6 379 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-203ENST00000409050 EID2Q8N6I1 236 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 RAB40AQ8WXH6 277 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 NKD1Q969G9 470 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 FBXL8Q96CD0 374 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 OR2M4Q96R27 311 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 MYOCQ99972 504 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 FUNDC2Q9BWH2 189 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 ABCG5Q9H222 651 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 HSD3B7Q9H2F3 369 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 RRAGCQ9HB90 399 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 PRTFDC1Q9NRG1 225 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 PIGVQ9NUD9 493 aa5.84□□□□□ -1.47
SCN1A-203ENST00000409050 KLRF1Q9NZS2 232 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms