RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 AGAP5A6NIR3 686 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 DISC1C4P0D8 188 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 INMT-MINDY4F8WBC2 141 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 UPK1AO00322 258 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 TOR1AO14656 332 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 INPPL1O15357 1258 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 SLITRK5O94991 958 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 PAICSP22234 425 aaKnown RBP11.41□□□□□ -0.58
HMGB1-206ENST00000405805 MBTPS1Q14703 1052 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 TEAD4Q15561 434 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 PROX2Q3B8N5 592 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 CRB2Q5IJ48 1285 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 PRSS36Q5K4E3 855 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 FCGR1BQ92637 280 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 GGHQ92820 318 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 KLK6Q92876 244 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 PLD4Q96BZ4 506 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 SNX18Q96RF0 628 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 TSNAXQ99598 290 aaKnown RBP11.41□□□□□ -0.58
HMGB1-206ENST00000405805 ZNF416Q9BWM5 594 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 SLC29A3Q9BZD2 475 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 IFT46Q9NQC8 304 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 PCDHB11Q9Y5F2 797 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 CLCA1A8K7I4 914 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 ATG13O75143 517 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 CBR1P16152 277 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 G0S2P27469 103 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 MAGEA11P43364 429 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 MAPK8P45983 427 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 MGAT3Q09327 533 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 FAM180AQ6UWF9 173 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 ZFP3Q96NJ6 502 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 KCNK12Q9HB15 430 aa11.41□□□□□ -0.58
HMGB1-206ENST00000405805 L7N2F9 121 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 SLC30A4O14863 429 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 TO15178 435 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 GABARAPO95166 117 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 PPIBP23284 216 aaKnown RBP11.4□□□□□ -0.58
HMGB1-206ENST00000405805 NOS3P29474 1203 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 PKLRP30613 574 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 SSR2P43308 183 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 RAB8AP61006 207 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 SLC35A2P78381 396 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 IFITM3Q01628 133 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 TOR1AIP1Q5JTV8 583 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.4□□□□□ -0.58
HMGB1-206ENST00000405805 USP51Q70EK9 711 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 MSRB3Q8IXL7 192 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 ENTHD1Q8IYW4 607 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 YIPF7Q8N8F6 280 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 SLC9A6Q92581 669 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 WASH6PQ9NQA3 447 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 AHSPQ9NZD4 102 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 CXXC1Q9P0U4 656 aaPredicted RBP11.4□□□□□ -0.58
HMGB1-206ENST00000405805 NEU3Q9UQ49 428 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 POFUT2Q9Y2G5 429 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 ISM1B1AKI9 464 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 CYP2A6P11509 494 aaPredicted RBP11.4□□□□□ -0.58
HMGB1-206ENST00000405805 CXCR2P25025 360 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 RORCP51449 518 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 TSPAN5P62079 268 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 CSTF1Q05048 431 aaKnown RBP11.4□□□□□ -0.58
HMGB1-206ENST00000405805 SSX2Q16385 188 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 COX20Q5RI15 118 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 ZNF852Q6ZMS4 543 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 CYP4Z2PQ8N1L4 340 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 MAGEB10Q96LZ2 347 aaPredicted RBP11.4□□□□□ -0.58
HMGB1-206ENST00000405805 CREBZFQ9NS37 354 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 IMP3Q9NV31 184 aaKnown RBP11.4□□□□□ -0.58
HMGB1-206ENST00000405805 ZNF282Q9UDV7 671 aaPredicted RBP11.4□□□□□ -0.58
HMGB1-206ENST00000405805 CLEC4EQ9ULY5 219 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 RPH3AQ9Y2J0 694 aaPredicted RBP11.4□□□□□ -0.58
HMGB1-206ENST00000405805 PSME4Q14997 1843 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 KCNK5O95279 499 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 RLN1P04808 185 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 IGFBP1P08833 259 aaPredicted RBP11.4□□□□□ -0.58
HMGB1-206ENST00000405805 JUPP14923 745 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 ZNF3P17036 446 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 ITGA3P26006 1051 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 TRIM23P36406 574 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 SUOXP51687 545 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 C9orf64Q5T6V5 341 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 IDO2Q6ZQW0 420 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 LRRC70Q7Z2Q7 622 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 FOXRED2Q8IWF2 684 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 GPR151Q8TDV0 419 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 SSX3Q99909 188 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 FAM120CQ9NX05 1096 aaKnown RBP11.4□□□□□ -0.58
HMGB1-206ENST00000405805 PHF11Q9UIL8 331 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 CORO2BQ9UQ03 480 aa11.4□□□□□ -0.58
HMGB1-206ENST00000405805 DNAJB5O75953 348 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 POP4O95707 220 aaKnown RBP11.39□□□□□ -0.59
HMGB1-206ENST00000405805 PAHP00439 452 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 AMD1P17707 334 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 RYKP34925 604 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 TPMTP51580 245 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 SMSP52788 366 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 TAS2R41P59536 307 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 RGNQ15493 299 aa11.39□□□□□ -0.59
HMGB1-206ENST00000405805 ATAT1Q5SQI0 421 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms