RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 GTPBP1O00178 669 aaKnown RBP17.66■□□□□ 0.42
USP48-204ENST00000400301 PCDH17O14917 1159 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 MRPS14O60783 128 aaKnown RBP17.66■□□□□ 0.42
USP48-204ENST00000400301 DDCP20711 480 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 RELAQ04206 551 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 GRSF1Q12849 480 aaKnown RBP eCLIP17.66■□□□□ 0.42
USP48-204ENST00000400301 MEDAGQ5VYS4 303 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 OR4C11Q6IEV9 310 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 TMEM107Q6UX40 140 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 SGCDQ92629 289 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 BADQ92934 168 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 C11orf24Q96F05 449 aaPredicted RBP17.66■□□□□ 0.42
USP48-204ENST00000400301 MCCC1Q96RQ3 725 aaPredicted RBP17.66■□□□□ 0.42
USP48-204ENST00000400301 OR51E2Q9H255 320 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 KCNN2Q9H2S1 579 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 TAS2R7Q9NYW3 318 aa17.66■□□□□ 0.42
USP48-204ENST00000400301 PTPRFP10586 1907 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 GNB5O14775 395 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 CYP17A1P05093 508 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 JUNBP17275 347 aaPredicted RBP17.65■□□□□ 0.42
USP48-204ENST00000400301 SLC6A12P48065 614 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 RAB28P51157 221 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 RTL4Q6ZR62 310 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 ZBP1Q9H171 429 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 SLC35C2Q9NQQ7 365 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 PCDHGA2Q9Y5H1 932 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 PCDHGA10Q9Y5H3 936 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 GFYI3L273 518 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 M0R3H8 397 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 RAB36O95755 333 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 HIST1H2ABP04908 130 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 OSMP13725 252 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 HIST3H2AQ7L7L0 130 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 IQCF1Q8N6M8 205 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 HIST1H2ACQ93077 130 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 NTN4Q9HB63 628 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 SH3D21A4FU49 640 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 AREL1O15033 823 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 SLITRK5O94991 958 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 DRD2P14416 443 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 PORP16435 677 aaPredicted RBP17.65■□□□□ 0.42
USP48-204ENST00000400301 RPA4Q13156 261 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 CTU2Q2VPK5 515 aaKnown RBP17.65■□□□□ 0.42
USP48-204ENST00000400301 PLEKHG7Q6ZR37 379 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 PDZD3Q86UT5 571 aa17.65■□□□□ 0.42
USP48-204ENST00000400301 CNDP2Q96KP4 475 aaKnown RBP17.65■□□□□ 0.42
USP48-204ENST00000400301 A0A1W2PQU0 124 aa17.64■□□□□ 0.42
USP48-204ENST00000400301 ZNF860A6NHJ4 632 aa17.64■□□□□ 0.42
USP48-204ENST00000400301 OXSR1O95747 527 aaPredicted RBP17.64■□□□□ 0.42
USP48-204ENST00000400301 HLA-DQA2P01906 255 aa17.64■□□□□ 0.42
USP48-204ENST00000400301 PTGER1P34995 402 aa17.64■□□□□ 0.42
USP48-204ENST00000400301 CLK3P49761 638 aaKnown RBP17.64■□□□□ 0.42
USP48-204ENST00000400301 LCTLQ6UWM7 567 aa17.64■□□□□ 0.42
USP48-204ENST00000400301 NUP43Q8NFH3 380 aa17.64■□□□□ 0.42
USP48-204ENST00000400301 B3GNT7Q8NFL0 401 aa17.64■□□□□ 0.42
USP48-204ENST00000400301 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.64■□□□□ 0.42
USP48-204ENST00000400301 AHCYL2Q96HN2 611 aaKnown RBP17.64■□□□□ 0.42
USP48-204ENST00000400301 HHIPL1Q96JK4 782 aa17.64■□□□□ 0.42
USP48-204ENST00000400301 TRNT1Q96Q11 434 aaKnown RBP17.64■□□□□ 0.42
USP48-204ENST00000400301 MBOAT4Q96T53 435 aa17.64■□□□□ 0.42
USP48-204ENST00000400301 DKK3Q9UBP4 350 aa17.64■□□□□ 0.42
USP48-204ENST00000400301 PLXNB2O15031 1838 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 ISPDA4D126 451 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 AGR2O95994 175 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 FHP07954 510 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 BLVRAP53004 296 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 DCDC1P59894 354 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 RAB14P61106 215 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 HNRNPA0Q13151 305 aaKnown RBP17.64■□□□□ 0.41
USP48-204ENST00000400301 IDNKQ5T6J7 187 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 FRMPD2BQ6IN97 320 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 SLC36A4Q6YBV0 504 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 Q6ZNB5 142 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 GFM1Q96RP9 751 aaKnown RBP17.64■□□□□ 0.41
USP48-204ENST00000400301 TRPV5Q9NQA5 729 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 ING3Q9NXR8 418 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 CDK1P06493 297 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 MMP12P39900 470 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 SLC6A11P48066 632 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 CST6Q15828 149 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 TCEAL5Q5H9L2 206 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 COX20Q5RI15 118 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 KLHDC8AQ8IYD2 350 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 OR2L2Q8NH16 312 aa17.64■□□□□ 0.41
USP48-204ENST00000400301 RPRD1BQ9NQG5 326 aaKnown RBP17.64■□□□□ 0.41
USP48-204ENST00000400301 OR6A2O95222 327 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 EEF1AKMT2Q5JPI9 291 aaKnown RBP17.63■□□□□ 0.41
USP48-204ENST00000400301 SLC9B2Q86UD5 537 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 UXS1Q8NBZ7 420 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 OR56A3Q8NH54 315 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 SNX33Q8WV41 574 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 SLC22A4Q9H015 551 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 ADH1BP00325 375 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 TAS2R38P59533 333 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 NKG7Q16617 165 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 SLC35F1Q5T1Q4 408 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 FAM220AQ7Z4H9 259 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.63■□□□□ 0.41
USP48-204ENST00000400301 METTL4Q8N3J2 472 aa17.63■□□□□ 0.41
USP48-204ENST00000400301 CAMKVQ8NCB2 501 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms