RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 TARDBPQ13148 414 aaKnown RBP eCLIP13.03□□□□□ -0.32
USP49-201ENST00000373006 CRTC2Q53ET0 693 aaPredicted RBP13.03□□□□□ -0.32
USP49-201ENST00000373006 CRB2Q5IJ48 1285 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 TNFAIP8L2Q6P589 184 aaPredicted RBP13.03□□□□□ -0.32
USP49-201ENST00000373006 TPRG1Q6ZUI0 275 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 PLEKHM3Q6ZWE6 761 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 UBE2Q1Q7Z7E8 422 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 Q8N402 240 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 GDPD1Q8N9F7 314 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 DCAF4L2Q8NA75 395 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 C19orf18Q8NEA5 215 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 PROKR2Q8NFJ6 384 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 OR4M1Q8NGD0 313 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 WDR48Q8TAF3 677 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 BTN2A2Q8WVV5 523 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 GATAD2BQ8WXI9 593 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 NEIL2Q969S2 332 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 PPCDCQ96CD2 204 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 ZBED6CLQ96FA7 236 aaPredicted RBP13.03□□□□□ -0.32
USP49-201ENST00000373006 POLR2J3Q9H1A7 115 aaKnown RBP13.03□□□□□ -0.32
USP49-201ENST00000373006 FZD3Q9NPG1 666 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 ENOPH1Q9UHY7 261 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 RPL36Q9Y3U8 105 aaKnown RBP13.03□□□□□ -0.32
USP49-201ENST00000373006 PRKAB1Q9Y478 270 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 ALPK3Q96L96 1907 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 A8MVJ9 347 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 H0YIV9 168 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 PRKYO43930 277 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 OR2B3O76000 313 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 CYBAP13498 195 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 POU3F3P20264 500 aaPredicted RBP13.03□□□□□ -0.32
USP49-201ENST00000373006 C21orf58P58505 322 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 TAS2R50P59544 299 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 LSM11P83369 360 aaKnown RBP eCLIP13.03□□□□□ -0.32
USP49-201ENST00000373006 LCN1P1Q5VSP4 162 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 MEX3DQ86XN8 651 aaKnown RBP13.03□□□□□ -0.32
USP49-201ENST00000373006 SIPA1Q96FS4 1042 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 SCRN2Q96FV2 425 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 KATNB1Q9BVA0 655 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 MCUBQ9NWR8 336 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 MAPRE3Q9UPY8 281 aa13.03□□□□□ -0.32
USP49-201ENST00000373006 MYO7AQ13402 2215 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 BTN3A3O00478 584 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 IFNA14P01570 189 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 PCSK2P16519 638 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 MAP2K3P46734 347 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 SNRPGP62308 76 aaKnown RBP13.02□□□□□ -0.32
USP49-201ENST00000373006 RBBP4Q09028 425 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 MLLT11Q13015 90 aaPredicted RBP13.02□□□□□ -0.32
USP49-201ENST00000373006 HEPACAMQ14CZ8 416 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 ARHGEF6Q15052 776 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 TRIQKQ629K1 86 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 GRHL2Q6ISB3 625 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 COMMD6Q7Z4G1 85 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 OXR1Q8N573 874 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 SOCS4Q8WXH5 440 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 RAB8BQ92930 207 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 PHF21AQ96BD5 680 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 MSLNLQ96KJ4 702 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 RC3H2Q9HBD1 1191 aaKnown RBP13.02□□□□□ -0.32
USP49-201ENST00000373006 STOX2Q9P2F5 926 aaPredicted RBP13.02□□□□□ -0.32
USP49-201ENST00000373006 PCDHB7Q9Y5E2 793 aa13.02□□□□□ -0.32
USP49-201ENST00000373006 LOC102723532A0A0G2JNH3 316 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 FAM240BA0A1B0GVZ2 78 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 NCR1O76036 304 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 OR7A10O76100 309 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 IL1AP01583 271 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 BCHEP06276 602 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 FCER2P06734 321 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 ZNF250P15622 560 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 CPN2P22792 545 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 PTPN5P54829 565 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 DBPQ10586 325 aaPredicted RBP13.02□□□□□ -0.33
USP49-201ENST00000373006 SPIN4Q56A73 249 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 TOR2AQ5JU69 321 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 DCST1Q5T197 706 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 SHFQ7M4L6 423 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 C16orf62Q7Z3J2 963 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 CAMKMTQ7Z624 323 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 TMC8Q8IU68 726 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 FAM181AQ8N9Y4 354 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 BCL7CQ8WUZ0 217 aaPredicted RBP13.02□□□□□ -0.33
USP49-201ENST00000373006 MTERF3Q96E29 417 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 KCTD7Q96MP8 289 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 SORBS1Q9BX66 1292 aaKnown RBP13.02□□□□□ -0.33
USP49-201ENST00000373006 BHLHE41Q9C0J9 482 aaPredicted RBP13.02□□□□□ -0.33
USP49-201ENST00000373006 TMEM38AQ9H6F2 299 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 TRIM45Q9H8W5 580 aaPredicted RBP13.02□□□□□ -0.33
USP49-201ENST00000373006 DSPPQ9NZW4 1301 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 SEPT4O43236 478 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 HPGDSO60760 199 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 ADAMTS4O75173 837 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 IGSF6O95976 241 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 MPC1LP0DKB6 136 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 CYP2A6P11509 494 aaPredicted RBP13.02□□□□□ -0.33
USP49-201ENST00000373006 PCDH1Q08174 1060 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 ZNF763Q0D2J5 394 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 ILKQ13418 452 aa13.02□□□□□ -0.33
USP49-201ENST00000373006 ZNF630Q2M218 657 aaPredicted RBP13.02□□□□□ -0.33
USP49-201ENST00000373006 TRIM71Q2Q1W2 868 aaKnown RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms