RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 OPRD1P41143 372 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 RORCP51449 518 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 ZNF91Q05481 1191 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 RBBP4Q09028 425 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 MAP4K2Q12851 820 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 SLAMF1Q13291 335 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 PYDC2Q56P42 97 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 ERAP2Q6P179 960 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 NXPE4Q6UWF7 544 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 C6orf120Q7Z4R8 191 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 CCDC190Q86UF4 302 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 C7orf57Q8NEG2 295 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 VN1R2Q8NFZ6 395 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 GPR32P1Q8NGA4 272 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 TIFAQ96CG3 184 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 TMEM80Q96HE8 168 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 NECTIN4Q96NY8 510 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 PRAP1Q96NZ9 151 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 DEPDC7Q96QD5 511 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 TM9SF2Q99805 663 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 EFCAB11Q9BUY7 163 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 THSD1Q9NS62 852 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 CUEDC1Q9NWM3 386 aaPredicted RBP11.53□□□□□ -0.56
CLIP3-201ENST00000360535 IL20RAQ9UHF4 553 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 ALPK3Q96L96 1907 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 KIAA0100Q14667 2235 aaKnown RBP11.53□□□□□ -0.56
CLIP3-201ENST00000360535 RECKO95980 971 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 ACRP10323 421 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 NR2F1P10589 423 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 CD72P21854 359 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 TIE1P35590 1138 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 BUD31P41223 144 aaPredicted RBP11.53□□□□□ -0.56
CLIP3-201ENST00000360535 PRLHRP49683 370 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 SLC7A9P82251 487 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 ALDH6A1Q02252 535 aaKnown RBP11.53□□□□□ -0.56
CLIP3-201ENST00000360535 TCTN3Q6NUS6 607 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 PARS2Q7L3T8 475 aaKnown RBP11.53□□□□□ -0.56
CLIP3-201ENST00000360535 RAB43Q86YS6 212 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 KREMEN2Q8NCW0 462 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 C9orf43Q8TAL5 461 aaPredicted RBP11.53□□□□□ -0.56
CLIP3-201ENST00000360535 GATAD2BQ8WXI9 593 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 RSPO3Q9BXY4 272 aaPredicted RBP11.53□□□□□ -0.56
CLIP3-201ENST00000360535 COMMD3Q9UBI1 195 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 NUFIP1Q9UHK0 495 aaKnown RBP11.53□□□□□ -0.56
CLIP3-201ENST00000360535 NOX1Q9Y5S8 564 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 THSD7BQ9C0I4 1608 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 CENPXA8MT69 81 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 TSPAN19P0C672 248 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 SYN1P17600 705 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 HEPACAMQ14CZ8 416 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 SNAPC1Q16533 368 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 PRAMEF14Q5SWL7 426 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 PDZK1Q5T2W1 519 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 PRAMEF13Q5VWM6 474 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 THOC7Q6I9Y2 204 aaKnown RBP11.53□□□□□ -0.56
CLIP3-201ENST00000360535 GLCCI1Q86VQ1 547 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 IQCHQ86VS3 1027 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 SLC7A13Q8TCU3 470 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 ASB15Q8WXK1 588 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 EFHD2Q96C19 240 aaPredicted RBP11.53□□□□□ -0.56
CLIP3-201ENST00000360535 OR2A14Q96R47 310 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 PHOX2BQ99453 314 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 RAD9AQ99638 391 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 RACGAP1Q9H0H5 632 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 GON4LQ3T8J9 2241 aa11.53□□□□□ -0.56
CLIP3-201ENST00000360535 A0A1W2PQL4 384 aaPredicted RBP11.52□□□□□ -0.56
CLIP3-201ENST00000360535 ANTXRLA6NF34 631 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 FABP12A6NFH5 140 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 FAM47E-STBD1D6RA91 191 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 LATO43561 262 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 PRKYO43930 277 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 KLHL18O94889 574 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 OSMP13725 252 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 PTX3P26022 381 aaPredicted RBP11.52□□□□□ -0.56
CLIP3-201ENST00000360535 ELAVL4P26378 380 aaKnown RBP11.52□□□□□ -0.56
CLIP3-201ENST00000360535 CSTF2P33240 577 aaKnown RBP eCLIP11.52□□□□□ -0.56
CLIP3-201ENST00000360535 HTR3AP46098 478 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 PNLIPRP1P54315 467 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 EEF1A2Q05639 463 aaKnown RBP11.52□□□□□ -0.56
CLIP3-201ENST00000360535 KRR1Q13601 381 aaKnown RBP11.52□□□□□ -0.56
CLIP3-201ENST00000360535 C1DQ13901 141 aaKnown RBP11.52□□□□□ -0.56
CLIP3-201ENST00000360535 CRB2Q5IJ48 1285 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 ZNF544Q6NX49 715 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 ABI3BPQ7Z7G0 1075 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 KRT73Q86Y46 540 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 TMC8Q8IU68 726 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 SLC9A6Q92581 669 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 LRR1Q96L50 414 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 FYTTD1Q96QD9 318 aaKnown RBP11.52□□□□□ -0.56
CLIP3-201ENST00000360535 CDCA4Q9BXL8 241 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 NXF2Q9GZY0 626 aaKnown RBP11.52□□□□□ -0.56
CLIP3-201ENST00000360535 ANKRA2Q9H9E1 313 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 EQTNQ9NQ60 294 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 SPHK2Q9NRA0 654 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 TM7SF3Q9NS93 570 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 PAQR5Q9NXK6 330 aaPredicted RBP11.52□□□□□ -0.56
CLIP3-201ENST00000360535 ITGB1BP2Q9UKP3 347 aa11.52□□□□□ -0.56
CLIP3-201ENST00000360535 DOCK9Q9BZ29 2069 aa11.52□□□□□ -0.57
CLIP3-201ENST00000360535 UGT2B17O75795 530 aa11.52□□□□□ -0.57
CLIP3-201ENST00000360535 C8orf89P0DMQ9 161 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms