RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 NIPSNAP1Q9BPW8 284 aa13.2□□□□□ -0.3
TRIM4-201ENST00000349062 C6orf62Q9GZU0 229 aaPredicted RBP13.2□□□□□ -0.3
TRIM4-201ENST00000349062 TM9SF3Q9HD45 589 aa13.2□□□□□ -0.3
TRIM4-201ENST00000349062 C11orf16Q9NQ32 467 aa13.2□□□□□ -0.3
TRIM4-201ENST00000349062 NCKAP1Q9Y2A7 1128 aa13.2□□□□□ -0.3
TRIM4-201ENST00000349062 H3BN98 237 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 RNASET2O00584 256 aaKnown RBP13.19□□□□□ -0.3
TRIM4-201ENST00000349062 KLHL18O94889 574 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 CRHBPP24387 322 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 MASP1P48740 699 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 SNRPNP63162 240 aaKnown RBP13.19□□□□□ -0.3
TRIM4-201ENST00000349062 KCNJ10P78508 379 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 IFI44LQ53G44 452 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 Q6ZS52 159 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 CCDC80Q76M96 950 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 KLHDC8AQ8IYD2 350 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 POC5Q8NA72 575 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 OR2A1Q8NGT9 310 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.19□□□□□ -0.39e-7■■■■■ 35.1
TRIM4-201ENST00000349062 RORBQ92753 470 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 PROX1Q92786 737 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 TMEM19Q96HH6 336 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 MS4A8Q9BY19 250 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 TCEAL2Q9H3H9 227 aaPredicted RBP13.19□□□□□ -0.3
TRIM4-201ENST00000349062 SRMSQ9H3Y6 488 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 DZANK1Q9NVP4 752 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 TMEM45AQ9NWC5 275 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 SLC6A14Q9UN76 642 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 CYP8B1Q9UNU6 501 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 WDFY4Q6ZS81 3184 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 IGKV1-8A0A0C4DH67 115 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 M0R3H8 397 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 ZW10O43264 779 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 TBX1O43435 398 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 NDUFS2O75306 463 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 FPR1P21462 350 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 CXCR2P25025 360 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 IFITM3Q01628 133 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 DBPQ10586 325 aaPredicted RBP13.19□□□□□ -0.3
TRIM4-201ENST00000349062 CDK5R2Q13319 367 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 FXNQ16595 210 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 DEFB110Q30KQ9 67 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 INAVAQ3KP66 663 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 DEFB134Q4QY38 66 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 TMEM92Q6UXU6 159 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 ZNF793Q6ZN11 406 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 TP53I13Q8NBR0 393 aaPredicted RBP13.19□□□□□ -0.3
TRIM4-201ENST00000349062 COQ8BQ96D53 544 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 C16orf58Q96GQ5 468 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 BHLHE41Q9C0J9 482 aaPredicted RBP13.19□□□□□ -0.3
TRIM4-201ENST00000349062 SYNPO2LQ9H987 977 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 PAK1IP1Q9NWT1 392 aaPredicted RBP13.19□□□□□ -0.3
TRIM4-201ENST00000349062 IMPAD1Q9NX62 359 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 NDUFAF4Q9P032 175 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 BTNL2Q9UIR0 455 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 ATG4BQ9Y4P1 393 aa13.19□□□□□ -0.3
TRIM4-201ENST00000349062 A0A1W2PPV9 198 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 SOBPA7XYQ1 873 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 SRSF5Q13243 272 aaKnown RBP13.18□□□□□ -0.3
TRIM4-201ENST00000349062 NPTX1Q15818 432 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 RPE65Q16518 533 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 PRRT3Q5FWE3 981 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 XAF1Q6GPH4 301 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 WFDC6Q9BQY6 131 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 SEC14L3Q9UDX4 400 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 URB1O60287 2271 aaKnown RBP13.18□□□□□ -0.3
TRIM4-201ENST00000349062 CFAP54Q96N23 3096 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 PRSS38A1L453 326 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 ANHXE9PGG2 379 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 TPD52L2O43399 206 aaKnown RBP13.18□□□□□ -0.3
TRIM4-201ENST00000349062 SELENOWP63302 87 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 PRDX1Q06830 199 aaKnown RBP13.18□□□□□ -0.3
TRIM4-201ENST00000349062 LTB4RQ15722 352 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 KIAA1614Q5VZ46 1190 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 LAIR1Q6GTX8 287 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 SHQ1Q6PI26 577 aaKnown RBP13.18□□□□□ -0.3
TRIM4-201ENST00000349062 CCDC103Q8IW40 242 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 OR52N2Q8NGI0 321 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 DNAJB8Q8NHS0 232 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 RPL3LQ92901 407 aaKnown RBP13.18□□□□□ -0.3
TRIM4-201ENST00000349062 C11orf24Q96F05 449 aaPredicted RBP13.18□□□□□ -0.3
TRIM4-201ENST00000349062 ZNF556Q9HAH1 456 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 TMEM9Q9P0T7 183 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 ICKQ9UPZ9 632 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 CLCA2Q9UQC9 943 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 AP3M1Q9Y2T2 418 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 MDC1Q14676 2089 aaKnown RBP13.18□□□□□ -0.3
TRIM4-201ENST00000349062 ALPK2Q86TB3 2170 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 CXorf51AA0A1B0GTR3 108 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 C4orf51C9J302 202 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.18□□□□□ -0.3
TRIM4-201ENST00000349062 H0YAE9 185 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 FOXE1O00358 373 aaPredicted RBP13.18□□□□□ -0.3
TRIM4-201ENST00000349062 OR10H3O60404 316 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 NTN1O95631 604 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 IL1RNP18510 177 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 MAOBP27338 520 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 BSGP35613 385 aa13.18□□□□□ -0.3
TRIM4-201ENST00000349062 SIM1P81133 766 aaPredicted RBP13.18□□□□□ -0.3
TRIM4-201ENST00000349062 ZNF658BQ4V348 819 aaPredicted RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms