RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 DNAJB5O75953 348 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 CCNB2O95067 398 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 MFN2O95140 757 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 SNX4O95219 450 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 ELFN1P0C7U0 828 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 SOX9P48436 509 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 PRLHRP49683 370 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 KIF18BQ86Y91 864 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 OR9Q1Q8NGQ5 310 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 IPCEF1Q8WWN9 437 aaPredicted RBP10.14□□□□□ -0.79
USP28-201ENST00000003302 ZNF486Q96H40 463 aaPredicted RBP10.14□□□□□ -0.79
USP28-201ENST00000003302 KLHL31Q9H511 634 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 RANGRFQ9HD47 186 aaPredicted RBP10.14□□□□□ -0.79
USP28-201ENST00000003302 TAC3Q9UHF0 121 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 PLEKHM1Q9Y4G2 1056 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 ENPP4Q9Y6X5 453 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 OR10H3O60404 316 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 GPR37L1O60883 481 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 VIPR2P41587 438 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 CDC20Q12834 499 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 LYPLAL1Q5VWZ2 237 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 PLAG1Q6DJT9 500 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 ERICH5Q6P6B1 374 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 OR8D4Q8NGM9 314 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 OR6T1Q8NGN1 323 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 RAD9AQ99638 391 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 NUFIP1Q9UHK0 495 aaKnown RBP10.14□□□□□ -0.79
USP28-201ENST00000003302 HCN4Q9Y3Q4 1203 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 CENPVL1A0A0U1RR11 272 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 RPLP2P05387 115 aaKnown RBP10.14□□□□□ -0.79
USP28-201ENST00000003302 MMP12P39900 470 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 PDE7AQ13946 482 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.14□□□□□ -0.79
USP28-201ENST00000003302 GATAD2BQ8WXI9 593 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 C16orf58Q96GQ5 468 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 ZDHHC5Q9C0B5 715 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 CNIH4Q9P003 139 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 LSM7Q9UK45 103 aaKnown RBP10.14□□□□□ -0.79
USP28-201ENST00000003302 KCNE2Q9Y6J6 123 aa10.14□□□□□ -0.79
USP28-201ENST00000003302 DNAJB6O75190 326 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 SLC2A10O95528 541 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 PEPDP12955 493 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 MMP11P24347 488 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 UGT2B10P36537 528 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 MNX1P50219 401 aaPredicted RBP10.13□□□□□ -0.79
USP28-201ENST00000003302 RPS25P62851 125 aaKnown RBP10.13□□□□□ -0.79
USP28-201ENST00000003302 SLC7A9P82251 487 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 TARDBPQ13148 414 aaKnown RBP eCLIP10.13□□□□□ -0.797e-8■■□□□ 14.2
USP28-201ENST00000003302 RSBN1Q5VWQ0 802 aaPredicted RBP10.13□□□□□ -0.79
USP28-201ENST00000003302 PNCKQ6P2M8 343 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 CAMKMTQ7Z624 323 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 NR2C2APQ86WQ0 139 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 PHC2Q8IXK0 858 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 IRF7Q92985 503 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 NELL2Q99435 816 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 CCNB1IP1Q9NPC3 277 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 TOR4AQ9NXH8 423 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 CXXC1Q9P0U4 656 aaPredicted RBP10.13□□□□□ -0.79
USP28-201ENST00000003302 IGKV1-8A0A0C4DH67 115 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 ARAFP10398 606 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 VIPR1P32241 457 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 SDC2P34741 201 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 RAB25P57735 213 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 TPGS2Q68CL5 300 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 PGBD2Q6P3X8 592 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 UNC5DQ6UXZ4 953 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 ZNF793Q6ZN11 406 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 UBE3DQ7Z6J8 389 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 BBS1Q8NFJ9 593 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 ZNF689Q96CS4 500 aaPredicted RBP10.13□□□□□ -0.79
USP28-201ENST00000003302 TREX2Q9BQ50 279 aaPredicted RBP10.13□□□□□ -0.79
USP28-201ENST00000003302 POFUT2Q9Y2G5 429 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 CCRL2O00421 344 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 ZIC2O95409 532 aaPredicted RBP10.13□□□□□ -0.79
USP28-201ENST00000003302 APEX1P27695 318 aaKnown RBP10.13□□□□□ -0.79
USP28-201ENST00000003302 GAS1P54826 345 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 MTA1Q13330 715 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 CAMKK1Q8N5S9 505 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 TEFMQ96QE5 360 aaKnown RBP10.13□□□□□ -0.79
USP28-201ENST00000003302 CPEB1Q9BZB8 566 aaKnown RBP10.13□□□□□ -0.79
USP28-201ENST00000003302 RACGAP1Q9H0H5 632 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 CCDC86Q9H6F5 360 aaKnown RBP10.13□□□□□ -0.79
USP28-201ENST00000003302 TDP1Q9NUW8 608 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 ATP6V1HQ9UI12 483 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 A4GNTQ9UNA3 340 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 CHST2Q9Y4C5 530 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 GPSM3Q9Y4H4 160 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 CDRT1O95170 752 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 SERPIND1P05546 499 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 PXNP49023 591 aaPredicted RBP10.13□□□□□ -0.79
USP28-201ENST00000003302 AMER2Q8N7J2 671 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 LINC01555Q8NAE3 123 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 XAGE5Q8WWM1 108 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 ITPKCQ96DU7 683 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 SENP5Q96HI0 755 aaPredicted RBP10.13□□□□□ -0.79
USP28-201ENST00000003302 ZNF558Q96NG5 402 aa10.13□□□□□ -0.79
USP28-201ENST00000003302 ZNF282Q9UDV7 671 aaPredicted RBP10.13□□□□□ -0.79
USP28-201ENST00000003302 PGRMC2O15173 223 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 HOXC11O43248 304 aaPredicted RBP10.12□□□□□ -0.79
USP28-201ENST00000003302 C1GALT1C1LP0DN25 315 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms