RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 FLYWCH1Q4VC44 716 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 STEAP4Q687X5 459 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 ADGRD1Q6QNK2 874 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 ZNF793Q6ZN11 406 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 SPATA6LQ8N4H0 392 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 ACOT4Q8N9L9 421 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 SNX31Q8N9S9 440 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 SLC22A8Q8TCC7 542 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 FAM222BQ8WU58 562 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 PPWD1Q96BP3 646 aaKnown RBP17.87■□□□□ 0.45
CLN3-262ENST00000637699 SENP5Q96HI0 755 aaPredicted RBP17.87■□□□□ 0.45
CLN3-262ENST00000637699 JSRP1Q96MG2 331 aaPredicted RBP17.87■□□□□ 0.45
CLN3-262ENST00000637699 TMEM79Q9BSE2 394 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 EHD1Q9H4M9 534 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 SH2D2AQ9NP31 389 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 ZFP64Q9NPA5 681 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 CBLCQ9ULV8 474 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 RPH3AQ9Y2J0 694 aaPredicted RBP17.87■□□□□ 0.45
CLN3-262ENST00000637699 NCKAP5O14513 1909 aa17.87■□□□□ 0.45
CLN3-262ENST00000637699 MPDZO75970 2070 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 SH3BGRLO75368 114 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 COX7A2P14406 83 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 FOSL1P15407 271 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 CD22P20273 847 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 ATP5A1P25705 553 aaKnown RBP17.86■□□□□ 0.45
CLN3-262ENST00000637699 HSPA7P48741 367 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 WNT3P56703 355 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 MGAT5Q09328 741 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 FBXW10Q5XX13 1052 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 ANKMY2Q8IV38 441 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 C9orf40Q8IXQ3 194 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 FBXW8Q8N3Y1 598 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 LIX1Q8N485 282 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 NAXEQ8NCW5 288 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 FAM13CQ8NE31 585 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 TNIP2Q8NFZ5 429 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 NEIL3Q8TAT5 605 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 NUBPLQ8TB37 319 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 ACTRT1Q8TDG2 376 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 DOK4Q8TEW6 326 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 PAQR8Q8TEZ7 354 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 RNASE6Q93091 150 aaKnown RBP17.86■□□□□ 0.45
CLN3-262ENST00000637699 PTCD3Q96EY7 689 aaKnown RBP17.86■□□□□ 0.45
CLN3-262ENST00000637699 LRRC46Q96FV0 321 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 VPS39Q96JC1 886 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 DGAT2Q96PD7 388 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 SH3GL2Q99962 352 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 ROGDIQ9GZN7 287 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 DDX47Q9H0S4 455 aaKnown RBP17.86■□□□□ 0.45
CLN3-262ENST00000637699 TEX264Q9Y6I9 313 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 SPACA6W5XKT8 324 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 NINQ8N4C6 2090 aa17.86■□□□□ 0.45
CLN3-262ENST00000637699 LRRC3CA6NJW4 275 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 KDM4EB2RXH2 506 aaPredicted RBP17.85■□□□□ 0.45
CLN3-262ENST00000637699 HRKO00198 91 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 DVL2O14641 736 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 ZSCAN12O43309 604 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 FGF17O60258 216 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 LRATO95237 230 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 CPN2P22792 545 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 IVDP26440 423 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 ASCL1P50553 236 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 LYPD8Q6UX82 237 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 DGAT2L6Q6ZPD8 337 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 LRRC25Q8N386 305 aaPredicted RBP17.85■□□□□ 0.45
CLN3-262ENST00000637699 SPACA9Q96E40 222 aaPredicted RBP17.85■□□□□ 0.45
CLN3-262ENST00000637699 OSBPL9Q96SU4 736 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 TBCDQ9BTW9 1192 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 CNOT10Q9H9A5 744 aaKnown RBP17.85■□□□□ 0.45
CLN3-262ENST00000637699 PROK2Q9HC23 129 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 ACKR4Q9NPB9 350 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 PCDHGB3Q9Y5G1 929 aa17.85■□□□□ 0.45
CLN3-262ENST00000637699 IGKV3-11P04433 115 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 HIST1H1TP22492 207 aaPredicted RBP17.84■□□□□ 0.45
CLN3-262ENST00000637699 TACR1P25103 407 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 GGT5P36269 586 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 MSH2P43246 934 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 STT3AP46977 705 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 PDK4Q16654 411 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 HIST2H2ACQ16777 129 aaPredicted RBP17.84■□□□□ 0.45
CLN3-262ENST00000637699 AP5B1Q2VPB7 878 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 HIST2H2AA3Q6FI13 130 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 PAMR1Q6UXH9 720 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 CAMKMTQ7Z624 323 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 GPSM1Q86YR5 675 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 TCAIMQ8N3R3 496 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 SRFBP1Q8NEF9 429 aaKnown RBP17.84■□□□□ 0.45
CLN3-262ENST00000637699 OR10G3Q8NGC4 313 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 MBD6Q96DN6 1003 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 WDR34Q96EX3 536 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 KRT12Q99456 494 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 EFCAB11Q9BUY7 163 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 MS4A8Q9BY19 250 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 CNIH4Q9P003 139 aa17.84■□□□□ 0.45
CLN3-262ENST00000637699 FREM3P0C091 2139 aa17.83■□□□□ 0.45
CLN3-262ENST00000637699 C15orf38-AP3S2A0A0A6YYH1 394 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 SAP18O00422 153 aaKnown RBP17.83■□□□□ 0.44
CLN3-262ENST00000637699 DYRK3O43781 588 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 STK16O75716 305 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 TGFB1P01137 390 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms