RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 SVEP1Q4LDE5 3571 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 KIAA1549Q9HCM3 1950 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 A1L4Q6 167 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 GABRR3A8MPY1 467 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 C17orf105B2RV13 164 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 B4DXG7 233 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 PSMD12O00232 456 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 TYROBPO43914 113 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 PDE9AO76083 593 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 OR6B1O95007 311 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 CPA3P15088 417 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 CD1EP15812 388 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 ATP5F1P24539 256 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 CRHR1P34998 444 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 ALDH9A1P49189 494 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 IFFO1Q0D2I5 559 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 TUBA3CQ13748 450 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 AP5B1Q2VPB7 878 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 KRT71Q3SY84 523 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 TRMT12Q53H54 448 aaKnown RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 CDKL4Q5MAI5 379 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 NDUFAF5Q5TEU4 345 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 TUBA3EQ6PEY2 450 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 QSOX2Q6ZRP7 698 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 GALNTL5Q7Z4T8 443 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 GPR180Q86V85 440 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 LSM14AQ8ND56 463 aaKnown RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 ZNF721Q8TF20 911 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 CAVIN3Q969G5 261 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 ARL8AQ96BM9 186 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 CNRIP1Q96F85 164 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 OTUB1Q96FW1 271 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 CMTM7Q96FZ5 175 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 SERINC2Q96SA4 455 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 LPAR4Q99677 370 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 ELOVL6Q9H5J4 265 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 COPS7BQ9H9Q2 264 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 PRDM9Q9NQV7 894 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 OXSMQ9NWU1 459 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 HRNRQ86YZ3 2850 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 CDH16O75309 829 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 ERAL1O75616 437 aaKnown RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 MYL2P10916 166 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 ERVK-8P63133 956 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 HIST2H2ACQ16777 129 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 TSNAXIP1Q2TAA8 658 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 ARL13AQ5H913 290 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 PAGE2BQ5JRK9 111 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 HIST2H2AA3Q6FI13 130 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 IGFL2Q6UWQ7 119 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 GPRIN3Q6ZVF9 776 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 SLC2A12Q8TD20 617 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 MGARPQ8TDB4 240 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 TM4SF18Q96CE8 201 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 ARSGQ96EG1 525 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 OR1F2PQ96R84 312 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 CNPPD1Q9BV87 410 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 NT5DC2Q9H857 520 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 ZDHHC2Q9UIJ5 367 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 ERVK-19Q9WJR5 959 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 CCL27Q9Y4X3 112 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 PCDHGA11Q9Y5H2 935 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 PCDHGA10Q9Y5H3 936 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 DNAJC15Q9Y5T4 150 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 SAGE2PA6NJ88 616 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 C9JVG2 144 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 ITGA10O75578 1167 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 CELA3AP09093 270 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 COL6A2P12110 1019 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 CNTFP26441 200 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 ETV4P43268 484 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 RNF144AP50876 292 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 SOX8P57073 446 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 OC90Q02509 493 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 PCDH1Q08174 1060 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 ASPHQ12797 758 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 ZNF267Q14586 743 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 NAA25Q14CX7 972 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 BEND6Q5SZJ8 279 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 IL20RBQ6UXL0 311 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 Q6ZSR9 355 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 FRMD7Q6ZUT3 714 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 TDRPQ86YL5 185 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 RPRMLQ8N4K4 120 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 KAT2AQ92830 837 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 RELTQ969Z4 430 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 RGMAQ96B86 450 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 L3HYPDHQ96EM0 354 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 SENP5Q96HI0 755 aaPredicted RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 TUBB6Q9BUF5 446 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 C1QTNF3Q9BXJ4 246 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 DDX31Q9H8H2 851 aaKnown RBP5.3□□□□□ -1.56
CPNE3-208ENST00000614678 APCP25054 2843 aa5.3□□□□□ -1.56
CPNE3-208ENST00000614678 A0A1W2PQ72 361 aa5.29□□□□□ -1.56
CPNE3-208ENST00000614678 SKAP2O75563 359 aaPredicted RBP5.29□□□□□ -1.56
CPNE3-208ENST00000614678 WISP1O95388 367 aa5.29□□□□□ -1.56
CPNE3-208ENST00000614678 IL3P08700 152 aa5.29□□□□□ -1.56
CPNE3-208ENST00000614678 SOX3P41225 446 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms