RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 ADAM29Q9UKF5 820 aa10.4□□□□□ -0.74
VRK3-210ENST00000596121 CES1P1Q9UKY3 287 aa10.4□□□□□ -0.74
VRK3-210ENST00000596121 MRPS33Q9Y291 106 aaKnown RBP10.4□□□□□ -0.74
VRK3-210ENST00000596121 CCL27Q9Y4X3 112 aa10.4□□□□□ -0.74
VRK3-210ENST00000596121 CPAMD8Q8IZJ3 1885 aa10.4□□□□□ -0.75
VRK3-210ENST00000596121 MYO18BQ8IUG5 2567 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 RP1L1Q8IWN7 2480 aaPredicted RBP10.39□□□□□ -0.75
VRK3-210ENST00000596121 TRBV11-1A0A0K0K1C0 115 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 SERTM1A2A2V5 107 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 TTLL8A6PVC2 850 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 C17orf105B2RV13 164 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 TMEM233B4DJY2 109 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 J3QKU1 62 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 GPR75O95800 540 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 IFNA16P05015 189 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 BPGMP07738 259 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 NR2F6P10588 404 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 HSD3B1P14060 373 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 HSD3B2P26439 372 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 SOX18P35713 384 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 CD96P40200 585 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 STT3AP46977 705 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 TNFSF10P50591 281 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 MLF1P58340 268 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 ARG2P78540 354 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 SRSF11Q05519 484 aaKnown RBP10.39□□□□□ -0.75
VRK3-210ENST00000596121 STX4Q12846 297 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 CSTF3Q12996 717 aaKnown RBP10.39□□□□□ -0.75
VRK3-210ENST00000596121 TUBA3CQ13748 450 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 PRSS53Q2L4Q9 553 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 ARL13AQ5H913 290 aaPredicted RBP10.39□□□□□ -0.75
VRK3-210ENST00000596121 CFAP157Q5JU67 520 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 TUBA3EQ6PEY2 450 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 LRIG3Q6UXM1 1119 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 ARMC10Q8N2F6 343 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 OR1N1Q8NGS0 311 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 TM9SF4Q92544 642 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 TANKQ92844 425 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 SNRNP40Q96DI7 357 aaKnown RBP10.39□□□□□ -0.75
VRK3-210ENST00000596121 CNDP1Q96KN2 507 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 PKNOX2Q96KN3 472 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 IQCGQ9H095 443 aaKnown RBP10.39□□□□□ -0.75
VRK3-210ENST00000596121 CENPHQ9H3R5 247 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 TUBB1Q9H4B7 451 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 EPS8L2Q9H6S3 715 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 ZNF395Q9H8N7 513 aaPredicted RBP10.39□□□□□ -0.75
VRK3-210ENST00000596121 LIN28AQ9H9Z2 209 aaKnown RBP10.39□□□□□ -0.75
VRK3-210ENST00000596121 SLAMF7Q9NQ25 335 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 ANKRD10Q9NXR5 420 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 HEY2Q9UBP5 337 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 STK38LQ9Y2H1 464 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 SPACA6W5XKT8 324 aa10.39□□□□□ -0.75
VRK3-210ENST00000596121 UBR5O95071 2799 aaPredicted RBP10.38□□□□□ -0.75
VRK3-210ENST00000596121 FLNCQ14315 2725 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 BLACEA4D250 179 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 CCDC151A5D8V7 595 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 CTIFO43310 598 aaKnown RBP10.38□□□□□ -0.75
VRK3-210ENST00000596121 ZNF354AO60765 605 aaPredicted RBP10.38□□□□□ -0.75
VRK3-210ENST00000596121 CLPSP04118 112 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 DHRS4L1P0CG22 281 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 TNNI3P19429 210 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 MAPK12P53778 367 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 NAA20P61599 178 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 DUSP2Q05923 314 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 BTKQ06187 659 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 SERTAD2Q14140 314 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 ZNF169Q14929 603 aaPredicted RBP10.38□□□□□ -0.75
VRK3-210ENST00000596121 TLR1Q15399 786 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 MEP1AQ16819 746 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 UGT3A2Q3SY77 523 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 NDUFAF5Q5TEU4 345 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 ABHD17BQ5VST6 288 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 PAGE2Q7Z2X7 111 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 TRIM46Q7Z4K8 759 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 RPS19BP1Q86WX3 136 aaKnown RBP10.38□□□□□ -0.75
VRK3-210ENST00000596121 GBP7Q8N8V2 638 aaPredicted RBP10.38□□□□□ -0.75
VRK3-210ENST00000596121 MDS2Q8NDY4 140 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 OR2T11Q8NH01 316 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 CPT1CQ8TCG5 803 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 SLC2A12Q8TD20 617 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 ZNF721Q8TF20 911 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 THAP3Q8WTV1 239 aaPredicted RBP10.38□□□□□ -0.75
VRK3-210ENST00000596121 PGM2Q96G03 612 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 ZNF354BQ96LW1 612 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 SIGLEC12Q96PQ1 595 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 TAAR6Q96RI8 345 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 BARD1Q99728 777 aaKnown RBP10.38□□□□□ -0.75
VRK3-210ENST00000596121 HES7Q9BYE0 225 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 OR8D2Q9GZM6 311 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 RNF32Q9H0A6 362 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 ILKAPQ9H0C8 392 aaPredicted RBP10.38□□□□□ -0.75
VRK3-210ENST00000596121 SSU72Q9NP77 194 aaKnown RBP10.38□□□□□ -0.75
VRK3-210ENST00000596121 ASF1BQ9NVP2 202 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 AHSPQ9NZD4 102 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 MID2Q9UJV3 735 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 PCDHA9Q9Y5H5 950 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 CLCA3PQ9Y6N3 262 aa10.38□□□□□ -0.75
VRK3-210ENST00000596121 WDR91A4D1P6 747 aa10.37□□□□□ -0.75
VRK3-210ENST00000596121 OR5H15A6NDH6 313 aa10.37□□□□□ -0.75
VRK3-210ENST00000596121 GABRR3A8MPY1 467 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms