RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 METAP1P53582 386 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 PPP1R3AQ16821 1122 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 PDSS1Q5T2R2 415 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 ALKBH2Q6NS38 261 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 AMIGO2Q86SJ2 522 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 CROCCP3Q8IVE0 287 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 OR2L3Q8NG85 312 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 IFI44Q8TCB0 444 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 S100PBPQ96BU1 408 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 MTERF3Q96E29 417 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 NECAB3Q96P71 396 aaPredicted RBP9.37□□□□□ -0.91
LIG3-216ENST00000593099 G6PC3Q9BUM1 346 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 P2RY12Q9H244 342 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 ZBTB26Q9HCK0 441 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 SLC35C2Q9NQQ7 365 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 NECTIN3Q9NQS3 549 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 NFKBIL1Q9UBC1 381 aaPredicted RBP9.37□□□□□ -0.91
LIG3-216ENST00000593099 TMEM5Q9Y2B1 443 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 N6AMT1Q9Y5N5 214 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 OR5K3A6NET4 321 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 SGK494L7N484 410 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 TPPPO94811 219 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 CEACAM5P06731 702 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 S100A5P33763 92 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 GABRA3P34903 492 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 NKAIN2Q5VXU1 208 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 C1orf94Q6P1W5 598 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 COMMD2Q86X83 199 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 VRK3Q8IV63 474 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 ACOT4Q8N9L9 421 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 OR10H5Q8NGA6 315 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.37□□□□□ -0.91
LIG3-216ENST00000593099 RMND5BQ96G75 393 aaPredicted RBP9.37□□□□□ -0.91
LIG3-216ENST00000593099 MSLNLQ96KJ4 702 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 CLEC4MQ9H2X3 399 aaPredicted RBP9.37□□□□□ -0.91
LIG3-216ENST00000593099 MKKSQ9NPJ1 570 aaPredicted RBP9.37□□□□□ -0.91
LIG3-216ENST00000593099 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.37□□□□□ -0.91
LIG3-216ENST00000593099 TPRKBQ9Y3C4 175 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 SPIN1Q9Y657 262 aaPredicted RBP9.37□□□□□ -0.91
LIG3-216ENST00000593099 PCDHGA12O60330 932 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 ZNF24P17028 368 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 KIR2DL1P43626 348 aaPredicted RBP9.37□□□□□ -0.91
LIG3-216ENST00000593099 ACADVLP49748 655 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 VASPP50552 380 aaPredicted RBP9.37□□□□□ -0.91
LIG3-216ENST00000593099 ZP2Q05996 745 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 SPEM2Q0P670 501 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 KLHL12Q53G59 568 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 AAGABQ6PD74 315 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.37□□□□□ -0.91
LIG3-216ENST00000593099 ZNF548Q8NEK5 533 aaPredicted RBP9.37□□□□□ -0.91
LIG3-216ENST00000593099 KAT2AQ92830 837 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 TANKQ92844 425 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 OR6C1Q96RD1 312 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 ALOXE3Q9BYJ1 711 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 BHLHE41Q9C0J9 482 aaPredicted RBP9.37□□□□□ -0.91
LIG3-216ENST00000593099 U3KQV3 271 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 PTPRFP10586 1907 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 NPPAP01160 153 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 LINGO3P0C6S8 592 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 ACADLP28330 430 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 PKLRP30613 574 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 ZXDBP98169 803 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 BTBD16Q32M84 506 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 ZSWIM9Q86XI8 627 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 RNF130Q86XS8 419 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 MFSD9Q8NBP5 474 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 METTL2AQ96IZ6 378 aaKnown RBP9.37□□□□□ -0.91
LIG3-216ENST00000593099 Q96MT0 163 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 ZNF317Q96PQ6 595 aaPredicted RBP9.37□□□□□ -0.91
LIG3-216ENST00000593099 SLC30A3Q99726 388 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 GIN1Q9NXP7 522 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 B4GALT7Q9UBV7 327 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 LIPT1Q9Y234 373 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 NAALAD2Q9Y3Q0 740 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 GMPPBQ9Y5P6 360 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 PTGDR2Q9Y5Y4 395 aa9.37□□□□□ -0.91
LIG3-216ENST00000593099 M0QX08 132 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 ARHGAP33O14559 1287 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 SNPHO15079 494 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 MTRF1O75570 445 aaKnown RBP9.36□□□□□ -0.91
LIG3-216ENST00000593099 PLGP00747 810 aaPredicted RBP9.36□□□□□ -0.91
LIG3-216ENST00000593099 SERPINA1P01009 418 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 IGHEP01854 428 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 NOVA1P51513 510 aaKnown RBP9.36□□□□□ -0.91
LIG3-216ENST00000593099 RUNX1T1Q06455 604 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 COL9A2Q14055 689 aaPredicted RBP9.36□□□□□ -0.91
LIG3-216ENST00000593099 SMU1Q2TAY7 513 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 HMBOX1Q6NT76 420 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 P4HA3Q7Z4N8 544 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 HIPK1Q86Z02 1210 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 SNX11Q9Y5W9 270 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 PEX1O43933 1283 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 C9P02748 559 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 GP1BBP13224 206 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 NCK1P16333 377 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 AOC1P19801 751 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 UBAP2Q5T6F2 1119 aaKnown RBP9.36□□□□□ -0.91
LIG3-216ENST00000593099 TYW3Q6IPR3 259 aaKnown RBP9.36□□□□□ -0.91
LIG3-216ENST00000593099 PHTF2Q8N3S3 785 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 KRTCAP2Q8N6L1 136 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms