RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 POGLUT1Q8NBL1 392 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 FAM98AQ8NCA5 519 aaKnown RBP13.79□□□□□ -0.2
CLN3-213ENST00000565047 C7orf57Q8NEG2 295 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 TANKQ92844 425 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 TMEM125Q96AQ2 219 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 PPWD1Q96BP3 646 aaKnown RBP13.79□□□□□ -0.2
CLN3-213ENST00000565047 SENP5Q96HI0 755 aaPredicted RBP13.79□□□□□ -0.2
CLN3-213ENST00000565047 MRPL57Q9BQC6 102 aaKnown RBP13.79□□□□□ -0.2
CLN3-213ENST00000565047 CCDC77Q9BR77 488 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 OR8D2Q9GZM6 311 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 SH2D2AQ9NP31 389 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 NFU1Q9UMS0 254 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 KLF13Q9Y2Y9 288 aaPredicted RBP13.79□□□□□ -0.2
CLN3-213ENST00000565047 ANGPTL3Q9Y5C1 460 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 HRH3Q9Y5N1 445 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 MYO7BQ6PIF6 2116 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 NOTCH2Q04721 2471 aa13.79□□□□□ -0.2
CLN3-213ENST00000565047 POC1B-GALNT4F8VUJ3 575 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 KLRC4-KLRK1H3BQV0 150 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 KIF2AO00139 706 aaPredicted RBP13.78□□□□□ -0.2
CLN3-213ENST00000565047 WWP2O00308 870 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 KRT38O76015 456 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 GPR75O95800 540 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 CLPSP04118 112 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 FAM153BP0C7A2 387 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 FAM58BPP0C7Q3 252 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 PTGER1P34995 402 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 SOX3P41225 446 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 RBPJQ06330 500 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 BIKQ13323 160 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 CDSNQ15517 529 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 MPEG1Q2M385 716 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 TSNAXIP1Q2TAA8 658 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 FAM153CQ494X1 144 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 GGTA1PQ4G0N0 100 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 PIGGQ5H8A4 983 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 FAM219BQ5XKK7 198 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 LYPD8Q6UX82 237 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 BNC2Q6ZN30 1099 aaPredicted RBP13.78□□□□□ -0.2
CLN3-213ENST00000565047 RPS27LQ71UM5 84 aaKnown RBP13.78□□□□□ -0.2
CLN3-213ENST00000565047 DOLPP1Q86YN1 238 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 MYLK4Q86YV6 388 aaPredicted RBP13.78□□□□□ -0.2
CLN3-213ENST00000565047 C9orf40Q8IXQ3 194 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 TMEM156Q8N614 296 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 PSD4Q8NDX1 1056 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 ZNF483Q8TF39 744 aaPredicted RBP13.78□□□□□ -0.2
CLN3-213ENST00000565047 REPS1Q96D71 796 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 SCYL1Q96KG9 808 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 MRPL46Q9H2W6 279 aaKnown RBP13.78□□□□□ -0.2
CLN3-213ENST00000565047 PHF11Q9UIL8 331 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 TMCO1Q9UM00 188 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 ENTPD4Q9Y227 616 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 KLF2Q9Y5W3 355 aaPredicted RBP13.78□□□□□ -0.2
CLN3-213ENST00000565047 SPACA6W5XKT8 324 aa13.78□□□□□ -0.2
CLN3-213ENST00000565047 NCOA6Q14686 2063 aaPredicted RBP13.78□□□□□ -0.2
CLN3-213ENST00000565047 A0A0G2JMM0 328 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 A0A1W2PPB8 328 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 A0A1W2PRS3 328 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 A0A1W2PS29 197 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 A8MT66 165 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 KIR3DP1A8MWS1 328 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 PGRMC2O15173 223 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 RIPK2O43353 540 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 GLSO94925 669 aaPredicted RBP13.77□□□□□ -0.21
CLN3-213ENST00000565047 SEMA3DO95025 777 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 NADKO95544 446 aaPredicted RBP13.77□□□□□ -0.21
CLN3-213ENST00000565047 MLYCDO95822 493 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 SNRPAP09012 282 aaKnown RBP13.77□□□□□ -0.21
CLN3-213ENST00000565047 TNNI3P19429 210 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 GRNP28799 593 aaKnown RBP13.77□□□□□ -0.21
CLN3-213ENST00000565047 RFC3P40938 356 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 RAP1GDS1P52306 607 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 GPR85P60893 370 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 SPRED3Q2MJR0 410 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 ZNF791Q3KP31 576 aaPredicted RBP13.77□□□□□ -0.21
CLN3-213ENST00000565047 FRG2Q64ET8 278 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 SP5Q6BEB4 398 aaPredicted RBP13.77□□□□□ -0.21
CLN3-213ENST00000565047 IL20RBQ6UXL0 311 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 MRGPRGQ86SM5 289 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 TICAM1Q8IUC6 712 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 ST13P4Q8IZP2 240 aaPredicted RBP13.77□□□□□ -0.21
CLN3-213ENST00000565047 SLC34A3Q8N130 599 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 GHDCQ8N2G8 530 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 ZNF808Q8N4W9 903 aaPredicted RBP13.77□□□□□ -0.21
CLN3-213ENST00000565047 OR4F6Q8NGB9 312 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 OR52N2Q8NGI0 321 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 KIF18AQ8NI77 898 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 NUBPLQ8TB37 319 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 MZB1Q8WU39 189 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 PHF12Q96QT6 1004 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 FRG2BQ96QU4 278 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 DMRTA2Q96SC8 542 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 LYARQ9NX58 379 aaKnown RBP13.77□□□□□ -0.21
CLN3-213ENST00000565047 MEMO1Q9Y316 297 aa13.77□□□□□ -0.21
CLN3-213ENST00000565047 FBN2P35556 2912 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 GLOD5A6NK44 160 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 A8MVJ9 347 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 HS6ST1O60243 411 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 AIFM1O95831 613 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 GBAP04062 536 aa13.76□□□□□ -0.21
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