RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CD1EP15812 388 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 STMN1P16949 149 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 ENDOUP21128 410 aaKnown RBP15.56■□□□□ 0.08
CLN3-211ENST00000564091 STT3AP46977 705 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 TBCCQ15814 346 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 MPEG1Q2M385 716 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 ZNF791Q3KP31 576 aaPredicted RBP15.56■□□□□ 0.08
CLN3-211ENST00000564091 C1orf185Q5T7R7 199 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 ADGRD1Q6QNK2 874 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 C9orf40Q8IXQ3 194 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 RNF175Q8N4F7 328 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 DGAT2Q96PD7 388 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 KRT12Q99456 494 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 GPR22Q99680 433 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 CD244Q9BZW8 370 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 PHACTR1Q9C0D0 580 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 OR51B5Q9H339 312 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 TXNDC16Q9P2K2 825 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 SPRR3Q9UBC9 169 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 RNF112Q9ULX5 631 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 L3MBTL1Q9Y468 752 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.56■□□□□ 0.08
CLN3-211ENST00000564091 TRGV5A0A0B4J1U4 118 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 SUSD5O60279 629 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 SCELO95171 688 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 NADKO95544 446 aaPredicted RBP15.55■□□□□ 0.08
CLN3-211ENST00000564091 S100BP04271 92 aaPredicted RBP15.55■□□□□ 0.08
CLN3-211ENST00000564091 IGKV3-11P04433 115 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 COX7A2P14406 83 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 CASP2P42575 452 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 SSR2P43308 183 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 IST1P53990 364 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 IGLV3-21P80748 117 aaPredicted RBP15.55■□□□□ 0.08
CLN3-211ENST00000564091 SLAMF1Q13291 335 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 ZKSCAN8Q15776 578 aaPredicted RBP15.55■□□□□ 0.08
CLN3-211ENST00000564091 TMEM35AQ53FP2 167 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 WLSQ5T9L3 541 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 PRAMEF20Q5VT98 475 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 SLC22A10Q63ZE4 541 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 MED27Q6P2C8 311 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 LYPD8Q6UX82 237 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 CHSY3Q70JA7 882 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 LRRC70Q7Z2Q7 622 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 WDR53Q7Z5U6 358 aaPredicted RBP15.55■□□□□ 0.08
CLN3-211ENST00000564091 OR7G3Q8NG95 312 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 NUBPLQ8TB37 319 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 CDKL2Q92772 493 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 SARAFQ96BY9 339 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 RBM18Q96H35 190 aaKnown RBP15.55■□□□□ 0.08
CLN3-211ENST00000564091 UBXN10Q96LJ8 280 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 RBBP8Q99708 897 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 CPNE1Q99829 537 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 KCNF1Q9H3M0 494 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 ALG9Q9H6U8 611 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 SH2D2AQ9NP31 389 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 SAYSD1Q9NPB0 183 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 MED13LQ71F56 2210 aa15.55■□□□□ 0.08
CLN3-211ENST00000564091 ITPR3Q14573 2671 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 DNAJC13O75165 2243 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 TCRBV9S1A1TA0A576 114 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 WASHC1A8K0Z3 465 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 HCN1O60741 890 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 WDR1O75083 606 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 PRKRAO75569 313 aaKnown RBP15.54■□□□□ 0.08
CLN3-211ENST00000564091 GP5P40197 560 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 RAB10P61026 200 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 GNG11P61952 73 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 KCNJ2P63252 427 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 FOLH1Q04609 750 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 ILF2Q12905 390 aaKnown RBP15.54■□□□□ 0.08
CLN3-211ENST00000564091 DLG1Q12959 904 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 CBLBQ13191 982 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 DDX39BQ13838 428 aaKnown RBP15.54■□□□□ 0.08
CLN3-211ENST00000564091 E2F2Q14209 437 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 DEPDC1Q5TB30 811 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 KHDRBS2Q5VWX1 349 aaKnown RBP15.54■□□□□ 0.08
CLN3-211ENST00000564091 C18orf63Q68DL7 685 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 OR4C11Q6IEV9 310 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 LAS2Q8IYD9 372 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 ZZZ3Q8IYH5 903 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 BBOF1Q8ND07 529 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 PAQR8Q8TEZ7 354 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 UBE2E3Q969T4 207 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 CMTM7Q96FZ5 175 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 RPF2Q9H7B2 306 aaKnown RBP15.54■□□□□ 0.08
CLN3-211ENST00000564091 PROK2Q9HC23 129 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 ZFP64Q9NPA5 681 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 DNAJB12Q9NXW2 375 aaKnown RBP15.54■□□□□ 0.08
CLN3-211ENST00000564091 SAR1BQ9Y6B6 198 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 AKAP6Q13023 2319 aa15.54■□□□□ 0.08
CLN3-211ENST00000564091 MAP1AP78559 2803 aaPredicted RBP15.53■□□□□ 0.08
CLN3-211ENST00000564091 CCDC188H7C350 402 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 UBXN8O00124 270 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 FAM155BO75949 473 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 LRATO95237 230 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 SLC25A35Q3KQZ1 300 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 ARSKQ6UWY0 536 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 C3orf62Q6ZUJ4 267 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 CMC1Q7Z7K0 106 aa15.53■□□□□ 0.08
CLN3-211ENST00000564091 ISCA2Q86U28 154 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms