RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TAAR6Q96RI8 345 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 ZNF607Q96SK3 696 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 SH2D3AQ9BRG2 576 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 CDT1Q9H211 546 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 FOXP1Q9H334 677 aaPredicted RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 OR51M1Q9H341 326 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 ABHD16BQ9H3Z7 469 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 ECT2Q9H8V3 914 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 MLXIPQ9HAP2 919 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 MCCC2Q9HCC0 563 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 CCNB1IP1Q9NPC3 277 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 IFT46Q9NQC8 304 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.84□□□□□ -1.63
VPS35-205ENST00000563984 TM7SF3Q9NS93 570 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 ZFP57Q9NU63 452 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 PRMT7Q9NVM4 692 aaPredicted RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 GAR1Q9NY12 217 aaKnown RBP4.84□□□□□ -1.63
VPS35-205ENST00000563984 ASIC5Q9NY37 505 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 PLEK2Q9NYT0 353 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 BTNL2Q9UIR0 455 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 STOML2Q9UJZ1 356 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 C3orf18Q9UK00 162 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 FBXW2Q9UKT8 454 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 CDC14AQ9UNH5 594 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 PCDHGB1Q9Y5G3 927 aa4.84□□□□□ -1.63
VPS35-205ENST00000563984 CTTNBP2Q8WZ74 1663 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 NLRP1Q9C000 1473 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 SMIM35A0A1B0GVV1 85 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 ARHGAP42A6NI28 874 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 KCNU1A8MYU2 1149 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 KDM4EB2RXH2 506 aaPredicted RBP4.83□□□□□ -1.64
VPS35-205ENST00000563984 FAM25AB3EWG3 89 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 FAM25CB3EWG5 89 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 FAM25GB3EWG6 89 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 PODXLO00592 558 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 GRID2O43424 1007 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 SPRY2O43597 315 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 HBP1O60381 514 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 NDUFS3O75489 264 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 AKAP3O75969 853 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 DFFBO76075 338 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 CNTN5O94779 1100 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 SNAI1O95863 264 aaPredicted RBP4.83□□□□□ -1.64
VPS35-205ENST00000563984 PGK1P00558 417 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 MT-ND5P03915 603 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 TK1P04183 234 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 IFNA4P05014 189 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 GP1BAP07359 652 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 ITGA5P08648 1049 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 ZDHHC11BP0C7U3 371 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 HGFP14210 728 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 CCNB1P14635 433 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 AREGP15514 252 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 CD36P16671 472 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 UCP1P25874 307 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 SOAT1P35610 550 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 CAPZBP47756 277 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 DGKQP52824 942 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 PRKAA2P54646 552 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 PSPHP78330 225 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 DEFA6Q01524 100 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 BNC1Q01954 994 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 CACNG1Q06432 222 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 TROAPQ12815 778 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 PDZK1IP1Q13113 114 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 BFSP2Q13515 415 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 OLIG2Q13516 323 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 ATP1A4Q13733 1029 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 RCAN2Q14206 197 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 DAZAP2Q15038 168 aaPredicted RBP4.83□□□□□ -1.64
VPS35-205ENST00000563984 TMED2Q15363 201 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 HYAL4Q2M3T9 481 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 NDUFAF6Q330K2 333 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 SLC36A3Q495N2 470 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 KLHL22Q53GT1 634 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 RAB41Q5JT25 222 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 LCE1EQ5T753 118 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 NKAIN2Q5VXU1 208 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 LIPJQ5W064 366 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 CST9LP1Q5W188 147 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 PLCXD3Q63HM9 321 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 RAP1GAP2Q684P5 730 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 ZNF470Q6ECI4 717 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 MOXD1Q6UVY6 613 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 PRSS57Q6UWY2 283 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 FAM151BQ6UXP7 276 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 NPSR1Q6W5P4 371 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 CERS6Q6ZMG9 384 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 MTSS1LQ765P7 747 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 TRAPPC11Q7Z392 1133 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 SNX20Q7Z614 316 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 ADCK2Q7Z695 626 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 TFAP2DQ7Z6R9 452 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 YRDCQ86U90 279 aaKnown RBP4.83□□□□□ -1.64
VPS35-205ENST00000563984 NRROSQ86YC3 692 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 BATF2Q8N1L9 274 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 STK40Q8N2I9 435 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 FSTL5Q8N475 847 aaPredicted RBP4.83□□□□□ -1.64
VPS35-205ENST00000563984 MREGQ8N565 214 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 ZNF561Q8N587 486 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms