RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 ETV3P41162 512 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 GNG2P59768 71 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 TARDBPQ13148 414 aaKnown RBP eCLIP13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 DDI2Q5TDH0 399 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 FAM92BQ6ZTR7 304 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 CMTM8Q8IZV2 173 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 IQCF1Q8N6M8 205 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 CREB3L4Q8TEY5 395 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 RIOK2Q9BVS4 552 aaKnown RBP13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 DYRK1BQ9Y463 629 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 SPIN1Q9Y657 262 aaPredicted RBP13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 IL1AP01583 271 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 IL3P08700 152 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 ELAVL4P26378 380 aaKnown RBP13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 CTSCP53634 463 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 ARPC4P59998 168 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 TBPL1P62380 186 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 POLR2LP62875 67 aaKnown RBP13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 HOXC5Q00444 222 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 GALK2Q01415 458 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 PRSS53Q2L4Q9 553 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 CCDC58Q4VC31 144 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 Q5BKY6 102 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 SLC35F1Q5T1Q4 408 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 HIST2H2AA3Q6FI13 130 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 TMIGD1Q6UXZ0 262 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 Q6ZVU0 165 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 RASGRP3Q8IV61 690 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 RDH10Q8IZV5 341 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 MMP21Q8N119 569 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 GDPD1Q8N9F7 314 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 JPH3Q8WXH2 748 aaPredicted RBP13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 C1GALT1C1Q96EU7 318 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 SLC6A18Q96N87 628 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 ARPC5LQ9BPX5 153 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 TMEM245Q9H330 911 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 DMRT3Q9NQL9 472 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 KCND3Q9UK17 655 aa13.3□□□□□ -0.28
VPS9D1-202ENST00000561976 ANKDD1BA6NHY2 528 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 HOXA2O43364 376 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 CPNE3O75131 537 aaKnown RBP13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 ABLIM3O94929 683 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 H1F0P07305 194 aaKnown RBP13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 SELPP16109 830 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 PDHA2P29803 388 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 GPC1P35052 558 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 EPHB3P54753 998 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 CHRNEQ04844 493 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 PDE7AQ13946 482 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 TMEM201Q5SNT2 666 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 ATAT1Q5SQI0 421 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 FAM71E1Q6IPT2 247 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 ERAP2Q6P179 960 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 VN1R3Q9BXE9 311 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 SLC6A16Q9GZN6 736 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 MYNNQ9NPC7 610 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 TOR4AQ9NXH8 423 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 SH2B3Q9UQQ2 575 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 HEPACAM2A8MVW5 462 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 ATG13O75143 517 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 SDC2P34741 201 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 KIR2DL3P43628 341 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 DGKGP49619 791 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 PNLIPRP1P54315 467 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 FAM214AQ32MH5 1076 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 YIF1BQ5BJH7 314 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 SAXO2Q658L1 398 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 C12orf73Q69YU5 71 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 PLET1Q6UQ28 207 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 SLC30A8Q8IWU4 369 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 CADM2Q8N3J6 435 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 ZNF480Q8WV37 535 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 BTN2A2Q8WVV5 523 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 IRF2BPLQ9H1B7 796 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 CXorf36Q9H7Y0 433 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 SEMA3GQ9NS98 782 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 GIMAP4Q9NUV9 329 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 PLEKHB1Q9UF11 243 aaPredicted RBP13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 SLC25A13Q9UJS0 675 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 HCN2Q9UL51 889 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 ANAPC1Q9H1A4 1944 aa13.29□□□□□ -0.28
VPS9D1-202ENST00000561976 PIPSLA2A3N6 862 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 FAAHO00519 579 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 URODP06132 367 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 MSL3P1P0C860 447 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 UQCRC2P22695 453 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 SLC9A3P48764 834 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 WDR5P61964 334 aaKnown RBP13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 LCN1P1Q5VSP4 162 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 SYCE2Q6PIF2 218 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 PAMR1Q6UXH9 720 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 GDPD4Q6W3E5 623 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 CCDC149Q6ZUS6 474 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 LAPTM4BQ86VI4 370 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 RBM45Q8IUH3 476 aaKnown RBP13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 CLDN22Q8N7P3 220 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 RASGEF1AQ8N9B8 481 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 SLC38A5Q8WUX1 472 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 RAB8BQ92930 207 aa13.28□□□□□ -0.28
VPS9D1-202ENST00000561976 RIPOR3Q96MK2 946 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms