RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TMEM203Q969S6 136 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 WDFY2Q96P53 400 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 DEPDC7Q96QD5 511 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 SORBS1Q9BX66 1292 aaKnown RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 BHLHE41Q9C0J9 482 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 POLR2J2Q9GZM3 115 aaKnown RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 RERGLQ9H628 205 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TMEM38AQ9H6F2 299 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 RC3H2Q9HBD1 1191 aaKnown RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 PRM3Q9NNZ6 103 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 PLEKHB1Q9UF11 243 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 KCND3Q9UK17 655 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 KLHL20Q9Y2M5 609 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 MTCL1Q9Y4B5 1905 aaKnown RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 SCN5AQ14524 2016 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 A0A0X1KG70 313 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 HYKKA2RU49 373 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 ARRDC5A6NEK1 342 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 FAM181BA6NEQ2 426 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TMEM88BA6NKF7 163 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 NOTOA8MTQ0 251 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 FADS2P1A8MWK0 482 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 KPNA5O15131 536 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 GPR37L1O60883 481 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 B4GALT2O60909 372 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 ABLIM3O94929 683 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 APOL3O95236 402 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 LATS1O95835 1130 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 CTSAP10619 480 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 RHCEP18577 417 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 PSMA1P25786 263 aaKnown RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 CST5P28325 142 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 CSTF2P33240 577 aaKnown RBP eCLIP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 RORCP51449 518 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF157P51786 506 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 CAV3P56539 151 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TAS2R50P59544 299 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 CD83Q01151 205 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF763Q0D2J5 394 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 FCHO2Q0JRZ9 810 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 C2orf80Q0P641 193 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 PDE7AQ13946 482 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TRIM60Q495X7 471 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 GPAT3Q53EU6 434 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 FAM209AQ5JX71 171 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TCTN3Q6NUS6 607 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 PAMR1Q6UXH9 720 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 USP45Q70EL2 814 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 GPR65Q8IYL9 337 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 NANOGP1Q8N7R0 232 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TCEANCQ8N8B7 351 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF740Q8NDX6 193 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 CREB3L4Q8TEY5 395 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 C16orf78Q8WTQ4 265 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 REPS1Q96D71 796 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 CXorf40BQ96DE9 158 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TMEM80Q96HE8 168 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 MCOLN1Q9GZU1 580 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 RACGAP1Q9H0H5 632 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 LINC00597Q9H2U6 94 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 ZDHHC6Q9H6R6 413 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 CXorf36Q9H7Y0 433 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 SLAMF7Q9NQ25 335 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TXNL4BQ9NX01 149 aaKnown RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 NDUFB11Q9NX14 153 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 GULP1Q9UBP9 304 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 STUB1Q9UNE7 303 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 CARD8Q9Y2G2 431 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 TMA7Q9Y2S6 64 aaKnown RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 CMAHPQ9Y471 501 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 GPSM3Q9Y4H4 160 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 DNMT3AQ9Y6K1 912 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-212ENST00000552491 THSD7BQ9C0I4 1608 aa5.16□□□□□ -1.58
LIMA1-212ENST00000552491 IQCMA0A1B0GVH7 501 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.15□□□□□ -1.58
LIMA1-212ENST00000552491 A0A1W2PQL4 384 aaPredicted RBP5.15□□□□□ -1.58
LIMA1-212ENST00000552491 PRKYO43930 277 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 ALX3O95076 343 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 IFNA14P01570 189 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 KLK1P06870 262 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 CHRNB1P11230 501 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 OSMP13725 252 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 ELAVL4P26378 380 aaKnown RBP5.15□□□□□ -1.58
LIMA1-212ENST00000552491 HLA-FP30511 346 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 GPC1P35052 558 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 SOAT1P35610 550 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 CHI3L1P36222 383 aaPredicted RBP5.15□□□□□ -1.58
LIMA1-212ENST00000552491 ETV3P41162 512 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 SNRPGP62308 76 aaKnown RBP5.15□□□□□ -1.58
LIMA1-212ENST00000552491 GPLD1P80108 840 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 CYP4F8P98187 520 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 CHRNEQ04844 493 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 RUNX1T1Q06455 604 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 SCN1BQ07699 218 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 HNRNPA0Q13151 305 aaKnown RBP5.15□□□□□ -1.58
LIMA1-212ENST00000552491 ILKQ13418 452 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 ASAH1Q13510 395 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 E2F2Q14209 437 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 NCF4Q15080 339 aa5.15□□□□□ -1.58
LIMA1-212ENST00000552491 TAF12Q16514 161 aa5.15□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms