RNA–Protein interactions for RNA: ENST00000533979.5

ATM-223, Transcript of ATM serine/threonine kinase, human

TSL 3

Gene ATM, Length 705 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-223	ENST00000533979	UGT3A2	Q3SY77	523 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	ACCSL	Q4AC99	568 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	KLC3	Q6P597	504 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	FAM159A	Q6UWV7	190 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	LINGO4	Q6UY18	593 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	SATL1	Q86VE3	508 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	CROCCP3	Q8IVE0	287 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	CHERP	Q8IWX8	916 aa	Known RBP	4.24	□□□□□ -1.73
ATM-223	ENST00000533979	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	4.24	□□□□□ -1.73
ATM-223	ENST00000533979	BBS5	Q8N3I7	341 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	GBP7	Q8N8V2	638 aa	Predicted RBP	4.24	□□□□□ -1.73
ATM-223	ENST00000533979	MAB21L3	Q8N8X9	362 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	NPEPL1	Q8NDH3	523 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	OR4K1	Q8NGD4	311 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	AGR3	Q8TD06	166 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	CCDC107	Q8WV48	283 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	PIGB	Q92521	554 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	SEMA4D	Q92854	862 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	FBXO32	Q969P5	355 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	ULK4	Q96C45	1275 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	PGM2	Q96G03	612 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	TPD52L3	Q96J77	140 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	PRMT1	Q99873	361 aa	Known RBP	4.24	□□□□□ -1.73
ATM-223	ENST00000533979	TRMT61B	Q9BVS5	477 aa	Known RBP	4.24	□□□□□ -1.73
ATM-223	ENST00000533979	CAPS2	Q9BXY5	557 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	MRPL13	Q9BYD1	178 aa	Known RBP	4.24	□□□□□ -1.73
ATM-223	ENST00000533979	DCLRE1B	Q9H816	532 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	UPF2	Q9HAU5	1272 aa	Known RBP	4.24	□□□□□ -1.73
ATM-223	ENST00000533979	ACKR4	Q9NPB9	350 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	GTSE1	Q9NYZ3	720 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	NARF	Q9UHQ1	456 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	TNN	Q9UQP3	1299 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	GREB1L	Q9C091	1923 aa	Predicted RBP	4.24	□□□□□ -1.73
ATM-223	ENST00000533979	MET	P08581	1390 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	ANKRD30B	Q9BXX2	1392 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	RAB3GAP2	Q9H2M9	1393 aa		4.24	□□□□□ -1.73
ATM-223	ENST00000533979	TULP4	Q9NRJ4	1543 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	FAM47DP	A6NHR8	397 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	ZNF587B	E7ETH6	402 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	TMEM178B	H3BS89	294 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	MID1	O15344	667 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	TNRC18	O15417	2968 aa	Predicted RBP	4.23	□□□□□ -1.73
ATM-223	ENST00000533979	RFPL2	O75678	378 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	TPM3	P06753	285 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	PROS1	P07225	676 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	SFTPB	P07988	381 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	LINC00271	P0C7V0	271 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	PAICS	P22234	425 aa	Known RBP	4.23	□□□□□ -1.73
ATM-223	ENST00000533979	GAL	P22466	123 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	FCGR2B	P31994	310 aa	Predicted RBP	4.23	□□□□□ -1.73
ATM-223	ENST00000533979	CCR1	P32246	355 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	SLC1A3	P43003	542 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	MAGEA11	P43364	429 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	TNFRSF4	P43489	277 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	CCL11	P51671	97 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	STX1A	Q16623	288 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	KRTAP27-1	Q3LI81	207 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	ADPRM	Q3LIE5	342 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	PAPPA-AS1	Q5QFB9	102 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	KRTAP5-11	Q6L8G4	156 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	PMF1	Q6P1K2	205 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	METAP1D	Q6UB28	335 aa	Predicted RBP	4.23	□□□□□ -1.73
ATM-223	ENST00000533979	ANGPTL8	Q6UXH0	198 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	PACS1	Q6VY07	963 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	IL17REL	Q6ZVW7	336 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	ERAS	Q7Z444	233 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	SLC22A9	Q8IVM8	553 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	CPSF7	Q8N684	471 aa	Known RBP	4.23	□□□□□ -1.73
ATM-223	ENST00000533979	LMNTD1	Q8N9Z9	388 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	PPFIBP2	Q8ND30	876 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	LNX1	Q8TBB1	728 aa	Predicted RBP	4.23	□□□□□ -1.73
ATM-223	ENST00000533979	RNF128	Q8TEB7	428 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	GUCD1	Q96NT3	240 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	CSF3R	Q99062	836 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	TBC1D10A	Q9BXI6	508 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	VN1R1	Q9GZP7	353 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	ACTL8	Q9H568	366 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	WDR76	Q9H967	626 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	SDF2L1	Q9HCN8	221 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	ACOXL	Q9NUZ1	547 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	ZNF224	Q9NZL3	707 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	PSORS1C1	Q9UIG5	152 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	SIX4	Q9UIU6	781 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	VDAC3	Q9Y277	283 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	YIPF1	Q9Y548	306 aa		4.23	□□□□□ -1.73
ATM-223	ENST00000533979	MARF1	Q9Y4F3	1742 aa	Known RBP	4.23	□□□□□ -1.73
ATM-223	ENST00000533979	SF3B1	O75533	1304 aa	Known RBP eCLIP	4.22	□□□□□ -1.73
ATM-223	ENST00000533979	PTPRC	P08575	1304 aa		4.22	□□□□□ -1.73
ATM-223	ENST00000533979	WDR19	Q8NEZ3	1342 aa		4.22	□□□□□ -1.73
ATM-223	ENST00000533979	TECPR2	O15040	1411 aa		4.22	□□□□□ -1.73
ATM-223	ENST00000533979	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		4.22	□□□□□ -1.73
ATM-223	ENST00000533979	ARPC4-TTLL3	A0A0A6YYG9	625 aa		4.22	□□□□□ -1.73
ATM-223	ENST00000533979	MED19	A0JLT2	244 aa	Predicted RBP	4.22	□□□□□ -1.73
ATM-223	ENST00000533979	MFSD2B	A6NFX1	497 aa		4.22	□□□□□ -1.73
ATM-223	ENST00000533979	ANKRD30BL	A7E2S9	258 aa		4.22	□□□□□ -1.73
ATM-223	ENST00000533979	C17orf105	B2RV13	164 aa		4.22	□□□□□ -1.73
ATM-223	ENST00000533979		H0YIV9	168 aa		4.22	□□□□□ -1.73
ATM-223	ENST00000533979		L7N2F9	121 aa		4.22	□□□□□ -1.73
ATM-223	ENST00000533979	LGALS8	O00214	317 aa		4.22	□□□□□ -1.73
ATM-223	ENST00000533979	LMX1B	O60663	402 aa		4.22	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms