RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 OXNAD1Q96HP4 312 aaPredicted RBP6.65□□□□□ -1.34
SDCBP-208ENST00000520228 CNDP2Q96KP4 475 aaKnown RBP6.65□□□□□ -1.34
SDCBP-208ENST00000520228 SPATA13Q96N96 652 aa6.65□□□□□ -1.34
SDCBP-208ENST00000520228 H2AFJQ9BTM1 129 aa6.65□□□□□ -1.34
SDCBP-208ENST00000520228 FRMD8P1Q9BZ68 369 aaPredicted RBP6.65□□□□□ -1.34
SDCBP-208ENST00000520228 NUF2Q9BZD4 464 aa6.65□□□□□ -1.34
SDCBP-208ENST00000520228 ABCG8Q9H221 673 aa6.65□□□□□ -1.34
SDCBP-208ENST00000520228 GBA3Q9H227 469 aa6.65□□□□□ -1.34
SDCBP-208ENST00000520228 CARD9Q9H257 536 aa6.65□□□□□ -1.34
SDCBP-208ENST00000520228 MAGEE1Q9HCI5 957 aa6.65□□□□□ -1.34
SDCBP-208ENST00000520228 PHPT1Q9NRX4 125 aaPredicted RBP6.65□□□□□ -1.34
SDCBP-208ENST00000520228 IRAK4Q9NWZ3 460 aa6.65□□□□□ -1.34
SDCBP-208ENST00000520228 SPASTQ9UBP0 616 aa6.65□□□□□ -1.34
SDCBP-208ENST00000520228 APOBEC3BQ9UH17 382 aaKnown RBP6.65□□□□□ -1.34
SDCBP-208ENST00000520228 CD84Q9UIB8 345 aa6.65□□□□□ -1.34
SDCBP-208ENST00000520228 AAR2Q9Y312 384 aaKnown RBP6.65□□□□□ -1.34
SDCBP-208ENST00000520228 CSNK1G3Q9Y6M4 447 aa6.65□□□□□ -1.34
SDCBP-208ENST00000520228 PLXND1Q9Y4D7 1925 aa6.65□□□□□ -1.34
SDCBP-208ENST00000520228 DOCK4Q8N1I0 1966 aa6.65□□□□□ -1.34
SDCBP-208ENST00000520228 SPAG17Q6Q759 2223 aa6.65□□□□□ -1.35
SDCBP-208ENST00000520228 CNOT1A5YKK6 2376 aaKnown RBP6.65□□□□□ -1.35
SDCBP-208ENST00000520228 KNL1Q8NG31 2342 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 TMEM202A6NGA9 273 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 F5H0A9 414 aaPredicted RBP6.64□□□□□ -1.35
SDCBP-208ENST00000520228 AQP9O43315 295 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 SEC31AO94979 1220 aaKnown RBP6.64□□□□□ -1.35
SDCBP-208ENST00000520228 TRIM16O95361 564 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 AGTP01019 485 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 TNFP01375 233 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 SLC4A1P02730 911 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 CLEC3BP05452 202 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 CTSEP14091 401 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 CKMT2P17540 419 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 HLA-DPA1P20036 260 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 AGAP20933 346 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 PSMB4P28070 264 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 TEAD1P28347 426 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 STIP1P31948 543 aaKnown RBP6.64□□□□□ -1.35
SDCBP-208ENST00000520228 SPINT3P49223 89 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 CDK3Q00526 305 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 C1orf61Q13536 156 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 SLC1A5Q15758 541 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 GSTA3Q16772 222 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 PARP6Q2NL67 630 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 SIRPB2Q5JXA9 342 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 RAET1GQ6H3X3 334 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 PARP16Q8N5Y8 322 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 PRR26Q8N8Z3 221 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 OR56A4Q8NGH8 313 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 OR4C6Q8NH72 309 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 ADAMTS15Q8TE58 950 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 C1orf54Q8WWF1 131 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 OR1E3Q8WZA6 343 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 HDAC2Q92769 488 aaKnown RBP6.64□□□□□ -1.35
SDCBP-208ENST00000520228 LRRC45Q96CN5 670 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 PPP1R2P1Q96PQ5 205 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 TMEM121Q9BTD3 319 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 FICDQ9BVA6 458 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 RIOK2Q9BVS4 552 aaKnown RBP6.64□□□□□ -1.35
SDCBP-208ENST00000520228 TCEAL2Q9H3H9 227 aaPredicted RBP6.64□□□□□ -1.35
SDCBP-208ENST00000520228 TRABDQ9H4I3 376 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 FGF22Q9HCT0 170 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 SMYD2Q9NRG4 433 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 TRMT1Q9NXH9 659 aaKnown RBP6.64□□□□□ -1.35
SDCBP-208ENST00000520228 NLGN3Q9NZ94 848 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 PKD2L2Q9NZM6 624 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 AASSQ9UDR5 926 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 MOSPD1Q9UJG1 213 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 ZNF148Q9UQR1 794 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 ZNF711Q9Y462 761 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 JRKLQ9Y4A0 524 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 PTGDR2Q9Y5Y4 395 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 DCHS1Q96JQ0 3298 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 CACNA1EQ15878 2313 aa6.64□□□□□ -1.35
SDCBP-208ENST00000520228 LMO7DNF2Z398 122 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 KIF5CO60282 957 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 SOD1P00441 154 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 IFNB1P01574 187 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 FGGP02679 453 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 FGF1P05230 155 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 GIMD1P0DJR0 217 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 TFPIP10646 304 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 NAGAP17050 411 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 MSNP26038 577 aaKnown RBP6.63□□□□□ -1.35
SDCBP-208ENST00000520228 DNAJC3Q13217 504 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 SNX1Q13596 522 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 ELOCQ15369 112 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 TBCEQ15813 527 aaPredicted RBP6.63□□□□□ -1.35
SDCBP-208ENST00000520228 CCNG2Q16589 344 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 DEFB133Q30KQ1 61 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 SGO1Q5FBB7 561 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 ALS2CLQ60I27 953 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 KCTD16Q68DU8 428 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 FAM180BQ6P0A1 224 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 CDC73Q6P1J9 531 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 DOK6Q6PKX4 331 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 TBC1D1Q86TI0 1168 aaPredicted RBP6.63□□□□□ -1.35
SDCBP-208ENST00000520228 CHCHD4Q8N4Q1 142 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 BLOC1S5Q8TDH9 187 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 MAIP1Q8WWC4 291 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms