RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 IGKV3-11P04433 115 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 PCNAP12004 261 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 DNAJA1P31689 397 aaKnown RBP11.44□□□□□ -0.58
CPSF3-204ENST00000489403 ADH7P40394 386 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 SSR2P43308 183 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 STT3AP46977 705 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 ZFP36L2P47974 494 aaKnown RBP11.44□□□□□ -0.58
CPSF3-204ENST00000489403 ART1P52961 327 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 DLX5P56178 289 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 IGLV3-21P80748 117 aaPredicted RBP11.44□□□□□ -0.58
CPSF3-204ENST00000489403 MYBPHQ13203 477 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 ZNF791Q3KP31 576 aaPredicted RBP11.44□□□□□ -0.58
CPSF3-204ENST00000489403 TMEM35AQ53FP2 167 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 C1orf185Q5T7R7 199 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 WLSQ5T9L3 541 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 MED27Q6P2C8 311 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 LYPD8Q6UX82 237 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 DGAT2L6Q6ZPD8 337 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 OR4N5Q8IXE1 308 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 LAS2Q8IYD9 372 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 RNF175Q8N4F7 328 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 BBOF1Q8ND07 529 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 NUBPLQ8TB37 319 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 PYROXD1Q8WU10 500 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 CDKL2Q92772 493 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 SENP5Q96HI0 755 aaPredicted RBP11.44□□□□□ -0.58
CPSF3-204ENST00000489403 UBXN10Q96LJ8 280 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 DGAT2Q96PD7 388 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 CPNE1Q99829 537 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 SORBS1Q9BX66 1292 aaKnown RBP11.44□□□□□ -0.58
CPSF3-204ENST00000489403 CD244Q9BZW8 370 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 PHACTR1Q9C0D0 580 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 KCNF1Q9H3M0 494 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 ZNF703Q9H7S9 590 aaPredicted RBP11.44□□□□□ -0.58
CPSF3-204ENST00000489403 PRM3Q9NNZ6 103 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 TXNDC16Q9P2K2 825 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 SPRR3Q9UBC9 169 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 L3MBTL1Q9Y468 752 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 SPACA6W5XKT8 324 aa11.44□□□□□ -0.58
CPSF3-204ENST00000489403 TRGV5A0A0B4J1U4 118 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 HRKO00198 91 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 HCN1O60741 890 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 PRKRAO75569 313 aaKnown RBP11.43□□□□□ -0.58
CPSF3-204ENST00000489403 ZWINTO95229 277 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 C1QAP02745 245 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 S100BP04271 92 aaPredicted RBP11.43□□□□□ -0.58
CPSF3-204ENST00000489403 RFPL3SP0C7P2 107 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 COX7A2P14406 83 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 GP5P40197 560 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 RAB10P61026 200 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 MRPS25P82663 173 aaKnown RBP11.43□□□□□ -0.58
CPSF3-204ENST00000489403 DLG1Q12959 904 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 SLAMF1Q13291 335 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 SLC10A1Q14973 349 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 AP5B1Q2VPB7 878 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 DEPDC1Q5TB30 811 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 PRAMEF20Q5VT98 475 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 KHDRBS2Q5VWX1 349 aaKnown RBP11.43□□□□□ -0.58
CPSF3-204ENST00000489403 C7orf57Q8NEG2 295 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 OR7G3Q8NG95 312 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 SLC22A8Q8TCC7 542 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 PAQR8Q8TEZ7 354 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 UBE2E3Q969T4 207 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 PPWD1Q96BP3 646 aaKnown RBP11.43□□□□□ -0.58
CPSF3-204ENST00000489403 SARAFQ96BY9 339 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 KRT12Q99456 494 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 CNPPD1Q9BV87 410 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 OR51B5Q9H339 312 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 ALG9Q9H6U8 611 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 PROK2Q9HC23 129 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 SLC24A3Q9HC58 644 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 SAYSD1Q9NPB0 183 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 NUDT4Q9NZJ9 180 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 ACAD8Q9UKU7 415 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 SAR1BQ9Y6B6 198 aa11.43□□□□□ -0.58
CPSF3-204ENST00000489403 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.43□□□□□ -0.58
CPSF3-204ENST00000489403 TCRBV9S1A1TA0A576 114 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 LRRC3CA6NJW4 275 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 FAM159BA6NKW6 160 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 UBXN8O00124 270 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 PLPP1O14494 284 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 GABRA1P14867 456 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 SERPINB1P30740 379 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 IST1P53990 364 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 PLIN5Q00G26 463 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 TNFRSF17Q02223 184 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 FOLH1Q04609 750 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 PCDH1Q08174 1060 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 RIPPLY2Q5TAB7 128 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 SLC22A10Q63ZE4 541 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 C18orf63Q68DL7 685 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 OR4C11Q6IEV9 310 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 GRHL2Q6ISB3 625 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 CHSY3Q70JA7 882 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 WDR53Q7Z5U6 358 aaPredicted RBP11.42□□□□□ -0.58
CPSF3-204ENST00000489403 CMC1Q7Z7K0 106 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 ISCA2Q86U28 154 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 MYRIPQ8NFW9 859 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 STAG3L4Q8TBR4 150 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 DOK4Q8TEW6 326 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms