RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 BUB1O43683 1085 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 LCA5LO95447 670 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 SERPING1P05155 500 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 LINC00271P0C7V0 271 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 RSPH10BP0C881 870 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 POLR2MP0CAP2 368 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 SP9P0CG40 484 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 HNRNPCL4P0DMR1 293 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 CPA3P15088 417 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 ZNF23P17027 643 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 ITGA2P17301 1181 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 RPA1P27694 616 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 SSTR1P30872 391 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 AHRP35869 848 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 USP8P40818 1118 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 GPC3P51654 580 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 CLDN15P56746 228 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 BRWD1-AS2P59051 145 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 KRTAP10-12P60413 245 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 CACNG1Q06432 222 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 ABRQ12979 859 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 GAMTQ14353 236 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 CASP8Q14790 479 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 RBBP7Q16576 425 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 KNOP1Q1ED39 458 aaKnown RBP3.79□□□□□ -1.8
VPS29-202ENST00000447578 ODF4Q2M2E3 257 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 HSP90AA5PQ58FG0 334 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 LCE1FQ5T754 118 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 WBP2NLQ6ICG8 309 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 CORO6Q6QEF8 472 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 GFRALQ6UXV0 394 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 PACS1Q6VY07 963 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 LONP2Q86WA8 852 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 TMEM219Q86XT9 240 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 KMT5CQ86Y97 462 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 TMEM126BQ8IUX1 230 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 ZC3H3Q8IXZ2 948 aaKnown RBP3.79□□□□□ -1.8
VPS29-202ENST00000447578 CDK20Q8IZL9 346 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 CCDC63Q8NA47 563 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 ZNF114Q8NC26 417 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 ZBTB44Q8NCP5 570 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 TRIM58Q8NG06 486 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 ACER1Q8TDN7 264 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 CRYGNQ8WXF5 182 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 PKNOX2Q96KN3 472 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 RPGRIP1Q96KN7 1286 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 FAM20AQ96MK3 541 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 PSMB7Q99436 277 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 CRACR2AQ9BSW2 395 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 UBXN6Q9BZV1 441 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 POLD4Q9HCU8 107 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 OLFML3Q9NRN5 406 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.79□□□□□ -1.8
VPS29-202ENST00000447578 SPASTQ9UBP0 616 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 TRMT6Q9UJA5 497 aaKnown RBP3.79□□□□□ -1.8
VPS29-202ENST00000447578 SNX12Q9UMY4 172 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 VDAC3Q9Y277 283 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 ZNF510Q9Y2H8 683 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 HYOU1Q9Y4L1 999 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 MYH6P13533 1939 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 ADAMTSL1Q8N6G6 1762 aa3.79□□□□□ -1.8
VPS29-202ENST00000447578 ATP8B3O60423 1300 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 IGLV5-37A0A075B6J1 123 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 C2orf92A0A1B0GVN3 265 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 LRRIQ3A6PVS8 624 aaPredicted RBP3.78□□□□□ -1.8
VPS29-202ENST00000447578 K7EPI3 171 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 BUB3O43684 328 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 SMPD2O60906 423 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 PALMO75781 387 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 NOL4O94818 638 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 PMS2P2O95744 297 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 MT-ATP6P00846 226 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 NR3C1P04150 777 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 FAM200BP0CF97 657 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 EPB41P11171 864 aaKnown RBP3.78□□□□□ -1.8
VPS29-202ENST00000447578 FERP16591 822 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 TCP1P17987 556 aaKnown RBP3.78□□□□□ -1.8
VPS29-202ENST00000447578 ARF4P18085 180 aaPredicted RBP3.78□□□□□ -1.8
VPS29-202ENST00000447578 OR3A1P47881 315 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 DNA2P51530 1060 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 VAMP7P51809 220 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 GMFBP60983 142 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 MRPS25P82663 173 aaKnown RBP3.78□□□□□ -1.8
VPS29-202ENST00000447578 POU3F1Q03052 451 aaPredicted RBP3.78□□□□□ -1.8
VPS29-202ENST00000447578 RELQ04864 619 aaPredicted RBP3.78□□□□□ -1.8
VPS29-202ENST00000447578 KLC1Q07866 573 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 IL10RBQ08334 325 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 KLHL30Q0D2K2 578 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 CETN1Q12798 172 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 PHKG1Q16816 387 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 HSP90B2PQ58FF3 399 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 IRAK1BP1Q5VVH5 260 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 ZNF772Q68DY9 489 aaPredicted RBP3.78□□□□□ -1.8
VPS29-202ENST00000447578 NEK5Q6P3R8 708 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 FUT10Q6P4F1 479 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 ASPGQ86U10 573 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 SATL1Q86VE3 508 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 MMD2Q8IY49 270 aa3.78□□□□□ -1.8
VPS29-202ENST00000447578 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.78□□□□□ -1.8
VPS29-202ENST00000447578 BATF2Q8N1L9 274 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms