RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 OR5P2Q8WZ92 322 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 C17orf62Q9BQA9 187 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 PALMDQ9NP74 551 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 PSORS1C1Q9UIG5 152 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 MOSPD1Q9UJG1 213 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 C5orf58C9J3I9 102 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 GASTP01350 101 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 IFNW1P05000 195 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 TGFBR2P37173 567 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 LIPAP38571 399 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 PCBP4P57723 403 aaKnown RBP18.39■□□□□ 0.53
COL9A3-201ENST00000343916 DUSP6Q16828 381 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 C6orf120Q7Z4R8 191 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 DNAJC22Q8N4W6 341 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 GGHQ92820 318 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 TEFMQ96QE5 360 aaKnown RBP18.39■□□□□ 0.53
COL9A3-201ENST00000343916 AICDAQ9GZX7 198 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 ZNF556Q9HAH1 456 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 GDE1Q9NZC3 331 aa18.39■□□□□ 0.53
COL9A3-201ENST00000343916 DOCK8Q8NF50 2099 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 CKAP5Q14008 2032 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 GLOD5A6NK44 160 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 SEMA7AO75326 666 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 SEC13P55735 322 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 GPR32P1Q8NGA4 272 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 OTUB1Q96FW1 271 aaPredicted RBP18.38■□□□□ 0.53
COL9A3-201ENST00000343916 ALPK1Q96QP1 1244 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 WFDC6Q9BQY6 131 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 NECTIN3Q9NQS3 549 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 HCN4Q9Y3Q4 1203 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 PMF1-BGLAPU3KQ54 211 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 HMGN4O00479 90 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 CCNB2O95067 398 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 NADKO95544 446 aaPredicted RBP18.38■□□□□ 0.53
COL9A3-201ENST00000343916 RHCEP18577 417 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 HSD17B2P37059 387 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 PXNP49023 591 aaPredicted RBP18.38■□□□□ 0.53
COL9A3-201ENST00000343916 PTGES3Q15185 160 aaKnown RBP18.38■□□□□ 0.53
COL9A3-201ENST00000343916 TCEA2Q15560 299 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 MAPK11Q15759 364 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 C9orf50Q5SZB4 431 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 OLIG3Q7RTU3 272 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 ZNF513Q8N8E2 541 aaPredicted RBP18.38■□□□□ 0.53
COL9A3-201ENST00000343916 RGMAQ96B86 450 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 SLC6A17Q9H1V8 727 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 RSPH9Q9H1X1 276 aaPredicted RBP18.38■□□□□ 0.53
COL9A3-201ENST00000343916 SERHL2Q9H4I8 314 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 NEUROD4Q9HD90 331 aa18.38■□□□□ 0.53
COL9A3-201ENST00000343916 SNRNP200O75643 2136 aaKnown RBP18.37■□□□□ 0.53
COL9A3-201ENST00000343916 ATG2AQ2TAZ0 1938 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 TRBV4-1A0A0J9YWV2 114 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 CLCA1A8K7I4 914 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 TRIM23P36406 574 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 HMGA2P52926 109 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 KCNC4Q03721 635 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 LEXMQ3ZCV2 418 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 ZNF793Q6ZN11 406 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 NCCRP1Q6ZVX7 275 aaPredicted RBP18.37■□□□□ 0.53
COL9A3-201ENST00000343916 RBM45Q8IUH3 476 aaKnown RBP18.37■□□□□ 0.53
COL9A3-201ENST00000343916 SNX29P2Q8IUI4 249 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 TAGAPQ8N103 731 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 OR5D16Q8NGK9 328 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 OR2A1Q8NGT9 310 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 APOBEC4Q8WW27 367 aaKnown RBP18.37■□□□□ 0.53
COL9A3-201ENST00000343916 PCBD2Q9H0N5 130 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 KLHL31Q9H511 634 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 NMNAT1Q9HAN9 279 aaPredicted RBP18.37■□□□□ 0.53
COL9A3-201ENST00000343916 FZD3Q9NPG1 666 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 DAPK2Q9UIK4 370 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 COQ9O75208 318 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 MFN2O95140 757 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 STSP08842 583 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 GABRB1P18505 474 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 CTSKP43235 329 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 TRIM16LQ309B1 348 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 PERM1Q5SV97 790 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 UBE2UQ5VVX9 321 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 KLHL17Q6TDP4 642 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 YAF2Q8IY57 180 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 VANGL1Q8TAA9 524 aaPredicted RBP18.37■□□□□ 0.53
COL9A3-201ENST00000343916 LGALS12Q96DT0 336 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 RPP25Q9BUL9 199 aaKnown RBP18.37■□□□□ 0.53
COL9A3-201ENST00000343916 TRPV4Q9HBA0 871 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 IMPAD1Q9NX62 359 aa18.37■□□□□ 0.53
COL9A3-201ENST00000343916 DNMT3AQ9Y6K1 912 aaPredicted RBP18.37■□□□□ 0.53
COL9A3-201ENST00000343916 CD72P21854 359 aa18.36■□□□□ 0.53
COL9A3-201ENST00000343916 CBLP22681 906 aa18.36■□□□□ 0.53
COL9A3-201ENST00000343916 POU1F1P28069 291 aa18.36■□□□□ 0.53
COL9A3-201ENST00000343916 MAT2AP31153 395 aaKnown RBP18.36■□□□□ 0.53
COL9A3-201ENST00000343916 TIE1P35590 1138 aa18.36■□□□□ 0.53
COL9A3-201ENST00000343916 SSR2P43308 183 aa18.36■□□□□ 0.53
COL9A3-201ENST00000343916 CCT3P49368 545 aaKnown RBP18.36■□□□□ 0.53
COL9A3-201ENST00000343916 PRDX1Q06830 199 aaKnown RBP18.36■□□□□ 0.53
COL9A3-201ENST00000343916 KIAA1211LQ6NV74 962 aa18.36■□□□□ 0.53
COL9A3-201ENST00000343916 HMGN2P46Q86SG4 172 aa18.36■□□□□ 0.53
COL9A3-201ENST00000343916 TP53I13Q8NBR0 393 aaPredicted RBP18.36■□□□□ 0.53
COL9A3-201ENST00000343916 DYNC2LI1Q8TCX1 351 aa18.36■□□□□ 0.53
COL9A3-201ENST00000343916 GANCQ8TET4 914 aa18.36■□□□□ 0.53
COL9A3-201ENST00000343916 ZBED6CLQ96FA7 236 aaPredicted RBP18.36■□□□□ 0.53
COL9A3-201ENST00000343916 CAMK1GQ96NX5 476 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms