RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SLCO3A1Q9UIG8 710 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 WDR45Q9Y484 360 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 CEPT1Q9Y6K0 416 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 CACNA1EQ15878 2313 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 ZCWPW2A0A1B0GU75 182 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 ZNF3P17036 446 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 PIN1Q13526 163 aaPredicted RBP8.35□□□□□ -1.07
RTN3-202ENST00000339997 NHSL2Q5HYW2 709 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 KANK2Q63ZY3 851 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 REEP3Q6NUK4 255 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 ENPP7Q6UWV6 458 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 B3GLCTQ6Y288 498 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 LILRA2Q8N149 483 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 CELF5Q8N6W0 485 aaKnown RBP8.35□□□□□ -1.07
RTN3-202ENST00000339997 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.35□□□□□ -1.07
RTN3-202ENST00000339997 RPLP0P6Q8NHW5 317 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 SLC22A8Q8TCC7 542 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 F2RL3Q96RI0 385 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 PCYT2Q99447 389 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 MAPKAP1Q9BPZ7 522 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 ANKHQ9HCJ1 492 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 MKKSQ9NPJ1 570 aaPredicted RBP8.35□□□□□ -1.07
RTN3-202ENST00000339997 AIG1Q9NVV5 245 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 GPRC5BQ9NZH0 403 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 SEC14L4Q9UDX3 406 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 NDRG2Q9UN36 371 aaKnown RBP8.35□□□□□ -1.07
RTN3-202ENST00000339997 PCDHB14Q9Y5E9 798 aa8.35□□□□□ -1.07
RTN3-202ENST00000339997 TEX13DA0A0J9YY54 714 aaPredicted RBP8.34□□□□□ -1.07
RTN3-202ENST00000339997 FEZF1A0PJY2 475 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 MEIS3P1A6NDR6 274 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 HMX3A6NHT5 357 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 EEF1E1-BLOC1S5C9J1V9 151 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 FLRT2O43155 660 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 TSPAN6O43657 245 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 SPDEFO95238 335 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 ADH1CP00326 375 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 PIGRP01833 764 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 PRNPP04156 253 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 EBLN1P0CF75 366 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 DCTP40126 519 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 HK3P52790 923 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 ILF3Q12906 894 aaKnown RBP eCLIP8.34□□□□□ -1.07
RTN3-202ENST00000339997 SQSTM1Q13501 440 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 RGMBQ6NW40 437 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 ANKRD54Q6NXT1 300 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 RIT1Q92963 219 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 MYRFLQ96LU7 910 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 CCM2Q9BSQ5 444 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 EFCAB11Q9BUY7 163 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 SRRDQ9UH36 339 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 RTTNQ86VV8 2226 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 H0YAE9 185 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 I6L893 689 aaPredicted RBP8.34□□□□□ -1.07
RTN3-202ENST00000339997 PCDH17O14917 1159 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 ARPC5O15511 151 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 PAK4O96013 591 aaPredicted RBP8.34□□□□□ -1.07
RTN3-202ENST00000339997 RLN2P04090 185 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 GTF2F2P13984 249 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 PRKACAP17612 351 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 BMP8BP34820 402 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 CAP1Q01518 475 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 OC90Q02509 493 aaPredicted RBP8.34□□□□□ -1.07
RTN3-202ENST00000339997 PTPRRQ15256 657 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 RPS26P11Q5JNZ5 115 aaPredicted RBP8.34□□□□□ -1.07
RTN3-202ENST00000339997 BMP8AQ7Z5Y6 402 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 ZNF227Q86WZ6 799 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 HDDC3Q8N4P3 179 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 OR6N2Q8NGY6 317 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 OR2AJ1Q8NGZ0 328 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 SLC25A44Q96H78 314 aaPredicted RBP8.34□□□□□ -1.07
RTN3-202ENST00000339997 SGIP1Q9BQI5 828 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 ABCG4Q9H172 646 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 MTG2Q9H4K7 406 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 LOC102723532A0A0G2JNH3 316 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 ITGA10O75578 1167 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 MAS1P04201 325 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 ITGA5P08648 1049 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 ANXA3P12429 323 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 HOXB6P17509 224 aaKnown RBP8.34□□□□□ -1.07
RTN3-202ENST00000339997 NPR2P20594 1047 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 CCNOP22674 350 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 PTX3P26022 381 aaPredicted RBP8.34□□□□□ -1.07
RTN3-202ENST00000339997 HOXC12P31275 282 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 NR0B1P51843 470 aaKnown RBP8.34□□□□□ -1.07
RTN3-202ENST00000339997 E2F1Q01094 437 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 CARD16Q5EG05 197 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 LETMD1Q6P1Q0 360 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 FIGNL1Q6PIW4 674 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 CRTC1Q6UUV9 634 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 GDPD4Q6W3E5 623 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 METTL3Q86U44 580 aaKnown RBP8.34□□□□□ -1.07
RTN3-202ENST00000339997 TMPRSS12Q86WS5 348 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 C3orf58Q8NDZ4 430 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 PHOSPHO1Q8TCT1 267 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 ZNF486Q96H40 463 aaPredicted RBP8.34□□□□□ -1.07
RTN3-202ENST00000339997 ZNF599Q96NL3 588 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 MACROD1Q9BQ69 325 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 ZNF649Q9BS31 505 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 UPB1Q9UBR1 384 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 STRCQ7RTU9 1775 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms