RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 PCDH17O14917 1159 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 SLITRK3O94933 977 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 KLK1P06870 262 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 G0S2P27469 103 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 CHRNB4P30926 498 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 GSG1LQ6UXU4 331 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 OR2T35Q8NGX2 323 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 NEIL3Q8TAT5 605 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 ZNF296Q8WUU4 475 aaPredicted RBP10.69□□□□□ -0.7
MSH6-201ENST00000234420 ZNF701Q9NV72 531 aaPredicted RBP10.69□□□□□ -0.7
MSH6-201ENST00000234420 COL20A1Q9P218 1284 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 DLGAP4Q9Y2H0 992 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 ZNF175Q9Y473 711 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 PCDHGB2Q9Y5G2 931 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 MYH4Q9Y623 1939 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 FLRT2O43155 660 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 CHATP28329 748 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 GKP32189 559 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 SMSP52788 366 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 ACTA2P62736 377 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 ACTG2P63267 376 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 ACTC1P68032 377 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 ACTA1P68133 377 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 OGDHQ02218 1023 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 FAM111BQ6SJ93 734 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 SERPINA9Q86WD7 417 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 ST8SIA2Q92186 375 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 DYNLRB1Q9NP97 96 aa10.69□□□□□ -0.7
MSH6-201ENST00000234420 HHLA1C9JL84 531 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 RAB27BO00194 218 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 POP4O95707 220 aaKnown RBP10.68□□□□□ -0.7
MSH6-201ENST00000234420 KCNC4Q03721 635 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 LSAMPQ13449 338 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 CHRFAM7AQ494W8 412 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 C14orf80Q86SX3 495 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 LIPHQ8WWY8 451 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 ZNF641Q96N77 438 aaPredicted RBP10.68□□□□□ -0.7
MSH6-201ENST00000234420 HAPLN3Q96S86 360 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 CCDC88AQ3V6T2 1871 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 UCHL1P09936 223 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 TACR2P21452 398 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 SOX2P48431 317 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 SLC14A2Q15849 920 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 FAM182AQ5T1J6 154 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 SPRYD7Q5W111 196 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 ADGRD1Q6QNK2 874 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 CARM1Q86X55 608 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 OR5H6Q8NGV6 325 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 SPPL2BQ8TCT7 592 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 DCAKDQ8WVC6 231 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 SLC13A3Q8WWT9 602 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 SLC35C1Q96A29 364 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 BTBD2Q9BX70 525 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 HES7Q9BYE0 225 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 WASH6PQ9NQA3 447 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 TXNL4BQ9NX01 149 aaKnown RBP10.68□□□□□ -0.7
MSH6-201ENST00000234420 NENFQ9UMX5 172 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 ATG4BQ9Y4P1 393 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 RBPJQ06330 500 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 SCARB2Q14108 478 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 GRM3Q14832 879 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 ATPAF1Q5TC12 328 aaPredicted RBP10.68□□□□□ -0.7
MSH6-201ENST00000234420 GDPD4Q6W3E5 623 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 LYSMD3Q7Z3D4 306 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 SUMF2Q8NBJ7 301 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 OR14L1PQ8NHC6 308 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 KCNN1Q92952 543 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 CDK15Q96Q40 435 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 MMP28Q9H239 520 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 MYNNQ9NPC7 610 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 AGPSO00116 658 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 PRICKLE3O43900 615 aaPredicted RBP10.68□□□□□ -0.7
MSH6-201ENST00000234420 TFP02787 698 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 NR2C1P13056 603 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 SMPD1P17405 629 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 CDK3Q00526 305 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 FOXC1Q12948 553 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 TDGQ13569 410 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 GRIN2CQ14957 1233 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.68□□□□□ -0.71e-10■■■□□ 17.6
MSH6-201ENST00000234420 OR2T5Q6IEZ7 315 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 FAM109AQ8N4B1 249 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 OR2T29Q8NH02 315 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 SGCZQ96LD1 299 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 ACTR6Q9GZN1 396 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 RPF2Q9H7B2 306 aaKnown RBP10.68□□□□□ -0.7
MSH6-201ENST00000234420 CXXC1Q9P0U4 656 aaPredicted RBP10.68□□□□□ -0.7
MSH6-201ENST00000234420 CDH10Q9Y6N8 788 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 NEXMIFQ5QGS0 1516 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 RTCAO00442 366 aaKnown RBP10.68□□□□□ -0.7
MSH6-201ENST00000234420 MGST1P10620 155 aaKnown RBP10.68□□□□□ -0.7
MSH6-201ENST00000234420 TYRP14679 529 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 FOXN2P32314 431 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 UGCGQ16739 394 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 CLVS2Q5SYC1 327 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 MITD1Q8WV92 249 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 MYRFLQ96LU7 910 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 ZNF436Q9C0F3 470 aaPredicted RBP10.68□□□□□ -0.7
MSH6-201ENST00000234420 IL25Q9H293 177 aa10.68□□□□□ -0.7
MSH6-201ENST00000234420 MYO3AQ8NEV4 1616 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms