RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 LEF1Q9UJU2 399 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 ATXN7L1Q9ULK2 861 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 PCDHGB2Q9Y5G2 931 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 COL22A1Q8NFW1 1626 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TTC28Q96AY4 2481 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 CCDC163A0A0D9SF12 145 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 DPPA5A6NC42 116 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 DRGXA6NNA5 263 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 PRAMEF2O60811 474 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SCGNO76038 276 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 STK17BO94768 372 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 GLCEO94923 617 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 FCER2P06734 321 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF23P17027 643 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 ATF6P18850 670 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 EIF2B2P49770 351 aaKnown RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 POU6F2P78424 691 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TARDBPQ13148 414 aaKnown RBP eCLIP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 HTR4Q13639 388 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SIRPB2Q5JXA9 342 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 REP15Q6BDI9 236 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 LRIG3Q6UXM1 1119 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 THOC6Q86W42 341 aaKnown RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF440Q8IYI8 595 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 OR8H2Q8N162 312 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 AMER2Q8N7J2 671 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 PRELID2Q8N945 189 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 CHST14Q8NCH0 376 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 GRPEL2Q8TAA5 225 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 C3orf49Q96BT1 292 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TBC1D20Q96BZ9 403 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 COQ8BQ96D53 544 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 CAMK1GQ96NX5 476 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SLC2A13Q96QE2 648 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 OSBPL11Q9BXB4 747 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 NOL11Q9H8H0 719 aaKnown RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 VPS29Q9UBQ0 182 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SALL4Q9UJQ4 1053 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 CNOT6Q9ULM6 557 aaKnown RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 RPH3AQ9Y2J0 694 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SNX11Q9Y5W9 270 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 ALPK2Q86TB3 2170 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 ARHGEF17Q96PE2 2063 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 PIEZO1Q92508 2521 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TMEM8BA6NDV4 472 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 FAM90A27PA6NNH2 459 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 LMO7DNF2Z398 122 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 GYPCP04921 128 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 HLA-DQB2P05538 268 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 KLK1P06870 262 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF43P17038 809 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 PGM1P36871 562 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 MERTKQ12866 999 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SGCAQ16586 387 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TBCELQ5QJ74 424 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 GCNT6Q5T4J0 391 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 MTDHQ86UE4 582 aaKnown RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 CREG2Q8IUH2 290 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 PYROXD2Q8N2H3 581 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 KDM1BQ8NB78 822 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 OR13H1Q8NG92 308 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 DPF1Q92782 380 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 MFSD3Q96ES6 412 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 C16orf58Q96GQ5 468 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 HDAC8Q9BY41 377 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SEMA6CQ9H3T2 930 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 C6orf106Q9H6K1 298 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TRIM36Q9NQ86 728 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 MAP4K5Q9Y4K4 846 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SCN3AQ9NY46 2000 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 LRP5O75197 1615 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SH3PXD2BA1X283 911 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 GGT3PA6NGU5 568 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TBX1O43435 398 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TPST1O60507 370 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SCAF4O95104 1147 aaKnown RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 ATE1O95260 518 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 STATHP02808 62 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 FTH1P19P0C7X4 201 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SLC6A6P31641 620 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 GSTM5P46439 218 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TPTEP56180 551 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 RPS23P62266 143 aaKnown RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 ID2Q02363 134 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 DPYSL2Q16555 572 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 CWF19L1Q69YN2 538 aaKnown RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SYCE2Q6PIF2 218 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 LDB1Q86U70 411 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 PLD5Q8N7P1 536 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 DDIT4LQ96D03 193 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 DTD2Q96FN9 168 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 C12orf65Q9H3J6 166 aaKnown RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 SMOC1Q9H4F8 434 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 VRTNQ9H8Y1 702 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 REXO2Q9Y3B8 237 aaKnown RBP4.81□□□□□ -1.64
SCN1A-218ENST00000640036 ATP23Q9Y6H3 246 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 RGPD4Q7Z3J3 1758 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 TAF1P21675 1872 aa4.81□□□□□ -1.64
SCN1A-218ENST00000640036 CKAP5Q14008 2032 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms