RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ZNF32P17041 273 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 EEF1DP29692 281 aaKnown RBP2.71□□□□□ -1.98
CD44-239ENST00000639002 ERVPABLB-1P60509 514 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 CETN1Q12798 172 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 SLC17A1Q14916 467 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 SPOUT1Q5T280 376 aaKnown RBP2.71□□□□□ -1.98
CD44-239ENST00000639002 WDR25Q64LD2 544 aaPredicted RBP2.71□□□□□ -1.98
CD44-239ENST00000639002 WSCD1Q658N2 575 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 FAM91A1Q658Y4 838 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 BEST4Q8NFU0 473 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 LINC01006Q8NI28 216 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 TBCKQ8TEA7 893 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 CCT8L2Q96SF2 557 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 RABEP2Q9H5N1 569 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 S100A14Q9HCY8 104 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 TMED7Q9Y3B3 224 aa2.71□□□□□ -1.98
CD44-239ENST00000639002 ARID1AO14497 2285 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 PANO1I0J062 215 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 FAM58BPP0C7Q3 252 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 CD1EP15812 388 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 PTAFRP25105 342 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 GJB2P29033 226 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 RAD23AP54725 363 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 KIAA0040Q15053 153 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 CDO1Q16878 200 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 MFSD4BQ5TF39 518 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 ZNF730Q6ZMV8 503 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 FBXO16Q8IX29 292 aaPredicted RBP2.7□□□□□ -1.98
CD44-239ENST00000639002 SMYD1Q8NB12 490 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 KIF18AQ8NI77 898 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 SEPT8Q92599 483 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 SGF29Q96ES7 293 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 ZNF274Q96GC6 653 aaPredicted RBP2.7□□□□□ -1.98
CD44-239ENST00000639002 TRIM7Q9C029 511 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 VIPAS39Q9H9C1 493 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 AMBNQ9NP70 447 aa2.7□□□□□ -1.98
CD44-239ENST00000639002 PFASO15067 1338 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 MEGF6O75095 1541 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 IGHV3-35A0A0C4DH35 117 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 CCDC162PA2VCL2 907 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 GTPBP10A4D1E9 387 aaKnown RBP2.69□□□□□ -1.98
CD44-239ENST00000639002 SELENOFO60613 162 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 PDGFBP01127 241 aaPredicted RBP2.69□□□□□ -1.98
CD44-239ENST00000639002 LYNP07948 512 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 GPX3P22352 226 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 PPP2R1AP30153 589 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 NPY4RP50391 375 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 SLC25A1P53007 311 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 FKBP1BP68106 108 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 C14orf28Q4W4Y0 310 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 AGAP6Q5VW22 663 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 SHEQ5VZ18 495 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 NHLRC1Q6VVB1 395 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 CCDC186Q7Z3E2 898 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 ANKRD46Q86W74 232 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 SDHCQ99643 169 aaPredicted RBP2.69□□□□□ -1.98
CD44-239ENST00000639002 TTYH2Q9BSA4 534 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 INPP5KQ9BT40 448 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 IKZF5Q9H5V7 419 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 ZNF665Q9H7R5 613 aa2.69□□□□□ -1.98
CD44-239ENST00000639002 MRPL17Q9NRX2 175 aaKnown RBP2.69□□□□□ -1.98
CD44-239ENST00000639002 EPOPA6NHQ4 379 aa2.68□□□□□ -1.98
CD44-239ENST00000639002 TMCO5BA8MYB1 307 aa2.68□□□□□ -1.98
CD44-239ENST00000639002 OR6A2O95222 327 aa2.68□□□□□ -1.98
CD44-239ENST00000639002 ODC1P11926 461 aa2.68□□□□□ -1.98
CD44-239ENST00000639002 ANKRD55Q3KP44 614 aa2.68□□□□□ -1.98
CD44-239ENST00000639002 LYPLAL1Q5VWZ2 237 aa2.68□□□□□ -1.98
CD44-239ENST00000639002 PM20D1Q6GTS8 502 aa2.68□□□□□ -1.98
CD44-239ENST00000639002 SLC30A6Q6NXT4 461 aa2.68□□□□□ -1.98
CD44-239ENST00000639002 VSIG2Q96IQ7 327 aa2.68□□□□□ -1.98
CD44-239ENST00000639002 HES7Q9BYE0 225 aa2.68□□□□□ -1.98
CD44-239ENST00000639002 PDRG1Q9NUG6 133 aa2.68□□□□□ -1.98
CD44-239ENST00000639002 ZNF319Q9P2F9 582 aa2.68□□□□□ -1.98
CD44-239ENST00000639002 MLXQ9UH92 298 aa2.68□□□□□ -1.98
CD44-239ENST00000639002 ABCG2Q9UNQ0 655 aa2.68□□□□□ -1.98
CD44-239ENST00000639002 ETV7Q9Y603 341 aa2.68□□□□□ -1.98
CD44-239ENST00000639002 NACAE9PAV3 2078 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 KAT6BQ8WYB5 2073 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 CSO75390 466 aaKnown RBP2.67□□□□□ -1.98
CD44-239ENST00000639002 CLN5O75503 358 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 PGAM2P15259 253 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 FNTAP49354 379 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 RPL27P61353 136 aaKnown RBP2.67□□□□□ -1.98
CD44-239ENST00000639002 GCNT7Q6ZNI0 430 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 TIGD4Q8IY51 512 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 CEND1Q8N111 149 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 GPR137CQ8N3F9 429 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 LSMEM1Q8N8F7 131 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 RNF149Q8NC42 400 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 OR1K1Q8NGR3 316 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 ZNF671Q8TAW3 534 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 FRAT1Q92837 279 aaPredicted RBP2.67□□□□□ -1.98
CD44-239ENST00000639002 PNPLA2Q96AD5 504 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 ZNF799Q96GE5 643 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 RBM18Q96H35 190 aaKnown RBP2.67□□□□□ -1.98
CD44-239ENST00000639002 MINDY3Q9H8M7 445 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 FAM212BQ9NTI7 297 aaPredicted RBP2.67□□□□□ -1.98
CD44-239ENST00000639002 NKIRAS2Q9NYR9 191 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 GMEB2Q9UKD1 530 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 EXOC6BQ9Y2D4 811 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms