RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 ARL13AQ5H913 290 aaPredicted RBP18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 RIPOR1Q6ZS17 1223 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 CLNKQ7Z7G1 428 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 C1orf52Q8N6N3 182 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 GBP7Q8N8V2 638 aaPredicted RBP18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 APCDD1LQ8NCL9 501 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 BRIX1Q8TDN6 353 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 ELP5Q8TE02 316 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 VPS50Q96JG6 964 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 CENPKQ9BS16 269 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 MMP25Q9NPA2 562 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 SIRT5Q9NXA8 310 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 MS4A12Q9NXJ0 267 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 C5AR2Q9P296 337 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 ZNF223Q9UK11 482 aaPredicted RBP18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 PTGDR2Q9Y5Y4 395 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 MYOCOSA0A1B0GUC4 107 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 BLACEA4D250 179 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 TMEM233B4DJY2 109 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 FGF4P08620 206 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 MYZAPP0CAP1 466 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 UROSP10746 265 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 GALNT18Q6P9A2 607 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 PTRH1Q86Y79 214 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 MMP21Q8N119 569 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 EFCAB3Q8N7B9 438 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 OR2T11Q8NH01 316 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 DNAJB14Q8TBM8 379 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 M1APQ8TC57 530 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 TM4SF18Q96CE8 201 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 LPAR4Q99677 370 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 C20orf27Q9GZN8 174 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 ZNF395Q9H8N7 513 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 VTI1BQ9UEU0 232 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 PHF11Q9UIL8 331 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 CES1P1Q9UKY3 287 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 MRPS33Q9Y291 106 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 ZNF451Q9Y4E5 1061 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 CSAG2Q9Y5P2 127 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 DNAJC15Q9Y5T4 150 aa18.24■□□□□ 0.51
SHKBP1-221ENST00000599833 CLDN4O14493 209 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 AZIN1O14977 448 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 PGRMC2O15173 223 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 BIRC5O15392 142 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 ITM2AO43736 263 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 ZWINTO95229 277 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 PRPH2P23942 346 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 SERPINB5P36952 375 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 SLC18A1P54219 525 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 ID2Q02363 134 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 SLC13A2Q13183 592 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 KIAA0040Q15053 153 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 TERF2Q15554 542 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 B3GNTL1Q67FW5 361 aaPredicted RBP18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 DGAT2L6Q6ZPD8 337 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 Q6ZSR9 355 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 KIF2BQ8N4N8 673 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 Q8NA96 180 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 PTPMT1Q8WUK0 201 aaPredicted RBP18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 SH3GL2Q99962 352 aa18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 RPF2Q9H7B2 306 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 HELZ2Q9BYK8 2649 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-221ENST00000599833 TMEM120BA0PK00 339 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 A8MUA0 341 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 B8ZZF3 427 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 MAN1A2O60476 641 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 MAGOHP61326 146 aaKnown RBP18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 FOLH1Q04609 750 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 ASPHQ12797 758 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 EXT1Q16394 746 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 BTBD16Q32M84 506 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 NADK2Q4G0N4 442 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 COLEC12Q5KU26 742 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 JMJD6Q6NYC1 403 aaPredicted RBP18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 CYP20A1Q6UW02 462 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 OR4N5Q8IXE1 308 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 SIRT6Q8N6T7 355 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 TANKQ92844 425 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 FCRL1Q96LA6 429 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 ALOXE3Q9BYJ1 711 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 AHSPQ9NZD4 102 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 ZDHHC2Q9UIJ5 367 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 MCM8Q9UJA3 840 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 TENM4Q6N022 2769 aa18.22■□□□□ 0.51
SHKBP1-221ENST00000599833 GLOD5A6NK44 160 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 SUV39H1O43463 412 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 LYPLA1O75608 230 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 SASH3O75995 380 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 SORBS2O94875 1100 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 NR2F6P10588 404 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 ICAM2P13598 275 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 SOX18P35713 384 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 MFAP5Q13361 173 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 TTMPQ5BVD1 217 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 CRB2Q5IJ48 1285 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 CCNYL2Q5T2Q4 361 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 NDUFAF5Q5TEU4 345 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 AGBL2Q5U5Z8 902 aa18.21■□□□□ 0.51
SHKBP1-221ENST00000599833 AGAP7PQ5VUJ5 663 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms