RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PLEKHS1Q5SXH7 462 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 ZNF517Q6ZMY9 492 aaPredicted RBP14.57□□□□□ -0.08
UPF1-204ENST00000596842 RASGEF1AQ8N9B8 481 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 XAGE5Q8WWM1 108 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 DIRAS2Q96HU8 199 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 SMURF1Q9HCE7 757 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 TAS2R9Q9NYW1 312 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 C1orf226A1L170 272 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 LRG1P02750 347 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 HOXB6P17509 224 aaKnown RBP14.57□□□□□ -0.08
UPF1-204ENST00000596842 GRIN2CQ14957 1233 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 TBRG1Q3YBR2 411 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 TIMM50Q3ZCQ8 353 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 ERAP2Q6P179 960 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 WDR53Q7Z5U6 358 aaPredicted RBP14.57□□□□□ -0.08
UPF1-204ENST00000596842 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.57□□□□□ -0.08
UPF1-204ENST00000596842 GEMIN6Q8WXD5 167 aaKnown RBP14.57□□□□□ -0.08
UPF1-204ENST00000596842 C1GALT1C1Q96EU7 318 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 NLNQ9BYT8 704 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 OR2AG1Q9H205 316 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 BRD7Q9NPI1 651 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 PLSCR3Q9NRY6 295 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 SPATA6Q9NWH7 488 aaPredicted RBP14.57□□□□□ -0.08
UPF1-204ENST00000596842 YARS2Q9Y2Z4 477 aaKnown RBP14.57□□□□□ -0.08
UPF1-204ENST00000596842 COL4A4P53420 1690 aaPredicted RBP14.56□□□□□ -0.08
UPF1-204ENST00000596842 SEMG1P04279 462 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 PTPN5P54829 565 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 POU6F2P78424 691 aaPredicted RBP14.56□□□□□ -0.08
UPF1-204ENST00000596842 IFITM2Q01629 132 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 TMEM115Q12893 351 aaPredicted RBP14.56□□□□□ -0.08
UPF1-204ENST00000596842 SIGIRRQ6IA17 410 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 C22orf42Q6IC83 251 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 FRMPD2BQ6IN97 320 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 OR5H6Q8NGV6 325 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 ZNF480Q8WV37 535 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 OVCA2Q8WZ82 227 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 PIK3R3Q92569 461 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 YME1L1Q96TA2 773 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 MOV10Q9HCE1 1003 aaKnown RBP14.56□□□□□ -0.08
UPF1-204ENST00000596842 ANGPT4Q9Y264 503 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 CCL16O15467 120 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 NOS1APO75052 506 aaPredicted RBP14.56□□□□□ -0.08
UPF1-204ENST00000596842 ATG13O75143 517 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 ELFN1P0C7U0 828 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 RAB25P57735 213 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 POLR2LP62875 67 aaKnown RBP14.56□□□□□ -0.08
UPF1-204ENST00000596842 SREBF2Q12772 1141 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 PIN1Q13526 163 aaPredicted RBP14.56□□□□□ -0.08
UPF1-204ENST00000596842 BAK1Q16611 211 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 ATAD3CQ5T2N8 411 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 ASTLQ6HA08 431 aaPredicted RBP14.56□□□□□ -0.08
UPF1-204ENST00000596842 TTC23LQ6PF05 361 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 SYCE2Q6PIF2 218 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 USP30Q70CQ3 517 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 CD99L2Q8TCZ2 262 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 SEMA3GQ9NS98 782 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 HCFC1R1Q9NWW0 138 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 FBXL12Q9NXK8 326 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 TMEM229AB2RXF0 380 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 PRMT3O60678 531 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 LSM11P83369 360 aaKnown RBP eCLIP14.56□□□□□ -0.08
UPF1-204ENST00000596842 DBPQ10586 325 aaPredicted RBP14.56□□□□□ -0.08
UPF1-204ENST00000596842 SSX1Q16384 188 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 SPIN4Q56A73 249 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 PYDC2Q56P42 97 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 PDZK1Q5T2W1 519 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 AGAP6Q5VW22 663 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 HIST2H2AA3Q6FI13 130 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 GRHL2Q6ISB3 625 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 AGAP4Q96P64 663 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 SLC6A16Q9GZN6 736 aa14.56□□□□□ -0.08
UPF1-204ENST00000596842 EXO1Q9UQ84 846 aaKnown RBP14.56□□□□□ -0.08
UPF1-204ENST00000596842 LEFTY2O00292 366 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 HOXA2O43364 376 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 NME6O75414 186 aaPredicted RBP14.55□□□□□ -0.08
UPF1-204ENST00000596842 UQCRC1P31930 480 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 UGT2B10P36537 528 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 HNRNPFP52597 415 aaKnown RBP14.55□□□□□ -0.08
UPF1-204ENST00000596842 DSTNP60981 165 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 FBXO43Q4G163 708 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 DENND6BQ8NEG7 585 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 PHOX2BQ99453 314 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 POLR2J3Q9H1A7 115 aaKnown RBP14.55□□□□□ -0.08
UPF1-204ENST00000596842 COMMD3Q9UBI1 195 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 MKLN1Q9UL63 735 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 GPR52Q9Y2T5 361 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 A0A1W2PQ09 198 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 GLOD5A6NK44 160 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 WASHC1A8K0Z3 465 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 TP53P04637 393 aaPredicted RBP14.55□□□□□ -0.08
UPF1-204ENST00000596842 INPP1P49441 399 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 HNRNPA0Q13151 305 aaKnown RBP14.55□□□□□ -0.08
UPF1-204ENST00000596842 SLAMF1Q13291 335 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 SPHARQ15513 63 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 PLAG1Q6DJT9 500 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 WASH2PQ6VEQ5 465 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 RAB43Q86YS6 212 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 C16orf78Q8WTQ4 265 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 POP5Q969H6 163 aaKnown RBP14.55□□□□□ -0.08
UPF1-204ENST00000596842 CRNNQ9UBG3 495 aaPredicted RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms