RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 SLC25A46Q96AG3 418 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 CIDECQ96AQ7 238 aaPredicted RBP12.62□□□□□ -0.39
VRK3-209ENST00000594948 RNF170Q96K19 258 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 DEPDC7Q96QD5 511 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 NLNQ9BYT8 704 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 NDEL1Q9GZM8 345 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 ISYNA1Q9NPH2 558 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 MRPL17Q9NRX2 175 aaKnown RBP12.62□□□□□ -0.39
VRK3-209ENST00000594948 DIMT1Q9UNQ2 313 aaKnown RBP12.62□□□□□ -0.39
VRK3-209ENST00000594948 INSL5Q9Y5Q6 135 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 TET1Q8NFU7 2136 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.62□□□□□ -0.39
VRK3-209ENST00000594948 A0A1W2PQ09 198 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 IRGMA1A4Y4 181 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 TSPAN11A1L157 253 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 FAM25AB3EWG3 89 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 FAM25CB3EWG5 89 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 FAM25GB3EWG6 89 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 PRRG1O14668 218 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 FFAR1O14842 300 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 TRIM3O75382 744 aaPredicted RBP12.62□□□□□ -0.39
VRK3-209ENST00000594948 MTX2O75431 263 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 KLHL18O94889 574 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 CTSAP10619 480 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 CPEP16870 476 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 ELAVL4P26378 380 aaKnown RBP12.62□□□□□ -0.39
VRK3-209ENST00000594948 MLLT3P42568 568 aaPredicted RBP12.62□□□□□ -0.39
VRK3-209ENST00000594948 BNC1Q01954 994 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 ZNF91Q05481 1191 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 HYAL2Q12891 473 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 TP53BP2Q13625 1128 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 PUM1Q14671 1186 aaKnown RBP eCLIP12.62□□□□□ -0.39
VRK3-209ENST00000594948 TBRG1Q3YBR2 411 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 DCST1Q5T197 706 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 HSD11B1LQ7Z5J1 315 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 LAX1Q8IWV1 398 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 LINC00471Q8N535 108 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 PSD4Q8NDX1 1056 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 GRPEL2Q8TAA5 225 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 TRIM63Q969Q1 353 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 UBE2E3Q969T4 207 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 NEURL3Q96EH8 262 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 RIPOR3Q96MK2 946 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 SGPP1Q9BX95 441 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 POLR2J2Q9GZM3 115 aaKnown RBP12.62□□□□□ -0.39
VRK3-209ENST00000594948 SNTG1Q9NSN8 517 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 CFAP97Q9P2B7 532 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 ACSL6Q9UKU0 697 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 ACAD8Q9UKU7 415 aa12.62□□□□□ -0.39
VRK3-209ENST00000594948 SCN5AQ14524 2016 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 TRBV4-1A0A0J9YWV2 114 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 A0A1W2PQ45 241 aaPredicted RBP12.61□□□□□ -0.39
VRK3-209ENST00000594948 A0A1W2PQY0 241 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 TMEM202A6NGA9 273 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 H3BM21 787 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 STK25O00506 426 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 MYL12BO14950 172 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 TSPAN6O43657 245 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 CYP17A1P05093 508 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 HBQ1P09105 142 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 HLA-DMAP28067 261 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 POU1F1P28069 291 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 SOAT1P35610 550 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 SOX3P41225 446 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 XKP51811 444 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 LIM2P55344 173 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 SLBPQ14493 270 aaKnown RBP eCLIP12.61□□□□□ -0.39
VRK3-209ENST00000594948 NDUFA9Q16795 377 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 SAXO2Q658L1 398 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 KIAA1211LQ6NV74 962 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 CD300LDQ6UXZ3 194 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 CCDC149Q6ZUS6 474 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 LIX1LQ8IVB5 337 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 PHC2Q8IXK0 858 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 FAM26EQ8N5C1 309 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 CREB3L4Q8TEY5 395 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 ZNF480Q8WV37 535 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 SAMD11Q96NU1 681 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 FUZQ9BT04 418 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 TSSK6Q9BXA6 273 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 POLDIP3Q9BY77 421 aaKnown RBP12.61□□□□□ -0.39
VRK3-209ENST00000594948 EPHX3Q9H6B9 360 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 TRIM39Q9HCM9 518 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 C11orf16Q9NQ32 467 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 STARD7Q9NQZ5 370 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 HCN2Q9UL51 889 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 SNX11Q9Y5W9 270 aa12.61□□□□□ -0.39
VRK3-209ENST00000594948 PIPSLA2A3N6 862 aa12.6□□□□□ -0.39
VRK3-209ENST00000594948 CCDC182A6NF36 153 aa12.6□□□□□ -0.39
VRK3-209ENST00000594948 OR2AG2A6NM03 316 aa12.6□□□□□ -0.39
VRK3-209ENST00000594948 C5orf58C9J3I9 102 aa12.6□□□□□ -0.39
VRK3-209ENST00000594948 AP3D1O14617 1153 aa12.6□□□□□ -0.39
VRK3-209ENST00000594948 ALX3O95076 343 aa12.6□□□□□ -0.39
VRK3-209ENST00000594948 C1orf105O95561 183 aa12.6□□□□□ -0.39
VRK3-209ENST00000594948 RAB36O95755 333 aa12.6□□□□□ -0.39
VRK3-209ENST00000594948 H1F0P07305 194 aaKnown RBP12.6□□□□□ -0.39
VRK3-209ENST00000594948 NPPBP16860 134 aa12.6□□□□□ -0.39
VRK3-209ENST00000594948 GSTM5P46439 218 aa12.6□□□□□ -0.39
VRK3-209ENST00000594948 SLC9A3P48764 834 aa12.6□□□□□ -0.39
VRK3-209ENST00000594948 DGKGP49619 791 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms