RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 NDUFAF7Q7L592 441 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 ADAMTS18Q8TE60 1221 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 TM4SF18Q96CE8 201 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 C3orf30Q96M34 536 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 NMRK1Q9NWW6 199 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 PHF11Q9UIL8 331 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 MMACHCQ9Y4U1 282 aa18.33■□□□□ 0.53
CLN3-225ENST00000566824 NSG1A0A0A6YYJ2 146 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 CTNSO60931 367 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 SKAP2O75563 359 aaPredicted RBP18.32■□□□□ 0.52
CLN3-225ENST00000566824 CEACAM4O75871 244 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 PDGFAP04085 211 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 CYC1P08574 325 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 GRK2P25098 689 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 MAPK12P53778 367 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 IMPG1Q17R60 797 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 PAGE2Q7Z2X7 111 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 GOLGA6L1Q8N7Z2 621 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 BOD1L1Q8NFC6 3051 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 FDCSPQ8NFU4 85 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 FER1L6-AS2Q96M78 137 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 ARHGAP9Q9BRR9 750 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 NUDT9Q9BW91 350 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 RPF2Q9H7B2 306 aaKnown RBP18.32■□□□□ 0.52
CLN3-225ENST00000566824 ATP13A2Q9NQ11 1180 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 PNPOQ9NVS9 261 aa18.32■□□□□ 0.52
CLN3-225ENST00000566824 CLDN4O14493 209 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 PCDH7O60245 1069 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 SNNO75324 88 aaPredicted RBP18.31■□□□□ 0.52
CLN3-225ENST00000566824 NR2F6P10588 404 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 RRADP55042 308 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 ACSM2AQ08AH3 577 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 KCNAB2Q13303 367 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 KIAA0040Q15053 153 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 ACSM2BQ68CK6 577 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 PAPD4Q6PIY7 484 aaKnown RBP18.31■□□□□ 0.52
CLN3-225ENST00000566824 DGAT2L6Q6ZPD8 337 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 DDIASQ8IXT1 998 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 GALNT16Q8N428 558 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 DOK4Q8TEW6 326 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 ABHD17AQ96GS6 310 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 UBL7Q96S82 380 aaPredicted RBP18.31■□□□□ 0.52
CLN3-225ENST00000566824 C5AR2Q9P296 337 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 HEY2Q9UBP5 337 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 MCM8Q9UJA3 840 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 MRPS33Q9Y291 106 aaKnown RBP18.31■□□□□ 0.52
CLN3-225ENST00000566824 RAP2CQ9Y3L5 183 aa18.31■□□□□ 0.52
CLN3-225ENST00000566824 POLR3HQ9Y535 204 aaPredicted RBP18.31■□□□□ 0.52
CLN3-225ENST00000566824 SLC28A1O00337 649 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 ATXN7O15265 892 aaPredicted RBP18.3■□□□□ 0.52
CLN3-225ENST00000566824 RSL1D1O76021 490 aaKnown RBP18.3■□□□□ 0.52
CLN3-225ENST00000566824 TIA1P31483 386 aaKnown RBP eCLIP18.3■□□□□ 0.52
CLN3-225ENST00000566824 PPP2R2AP63151 447 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 FOLH1Q04609 750 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 AIMP2Q13155 320 aaKnown RBP18.3■□□□□ 0.52
CLN3-225ENST00000566824 ZNF750Q32MQ0 723 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 SPIN4Q56A73 249 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 XKR7Q5GH72 579 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 NDUFAF5Q5TEU4 345 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 GALNT18Q6P9A2 607 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 RNF165Q6ZSG1 346 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 CLEC1AQ8NC01 280 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 NFAM1Q8NET5 270 aaPredicted RBP18.3■□□□□ 0.52
CLN3-225ENST00000566824 C16orf78Q8WTQ4 265 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 THOC3Q96J01 351 aaKnown RBP18.3■□□□□ 0.52
CLN3-225ENST00000566824 ALOXE3Q9BYJ1 711 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 PNO1Q9NRX1 252 aaKnown RBP18.3■□□□□ 0.52
CLN3-225ENST00000566824 SIRT5Q9NXA8 310 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 MS4A12Q9NXJ0 267 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 C19orf25Q9UFG5 118 aaPredicted RBP18.3■□□□□ 0.52
CLN3-225ENST00000566824 HAO1Q9UJM8 370 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 DLGAP4Q9Y2H0 992 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 SPACA6W5XKT8 324 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 CFAP46Q8IYW2 2715 aa18.3■□□□□ 0.52
CLN3-225ENST00000566824 KALRNO60229 2985 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 ATP6AP2A0A1C7CYW4 349 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 PCDH17O14917 1159 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 LSM1O15116 133 aaKnown RBP18.29■□□□□ 0.52
CLN3-225ENST00000566824 SEC22BO75396 215 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 ATP6AP2O75787 350 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 CHEK2O96017 543 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 IL3P08700 152 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 PRR35P0CG20 571 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 ITGAMP11215 1152 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 PRPH2P23942 346 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 TACR1P25103 407 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 ITGA3P26006 1051 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 TAS2R50P59544 299 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 IGLV3-21P80748 117 aaPredicted RBP18.29■□□□□ 0.52
CLN3-225ENST00000566824 ACTN3Q08043 901 aaPredicted RBP18.29■□□□□ 0.52
CLN3-225ENST00000566824 NR6A1Q15406 480 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 PRSS53Q2L4Q9 553 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 RFTN2Q52LD8 501 aaPredicted RBP18.29■□□□□ 0.52
CLN3-225ENST00000566824 DNAJB14Q8TBM8 379 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 PSMF1Q92530 271 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 ZNF75CPQ92670 426 aaPredicted RBP18.29■□□□□ 0.52
CLN3-225ENST00000566824 PPWD1Q96BP3 646 aaKnown RBP18.29■□□□□ 0.52
CLN3-225ENST00000566824 PPP1R36Q96LQ0 422 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 TUBB6Q9BUF5 446 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 ILKAPQ9H0C8 392 aaPredicted RBP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms