RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 WDR34Q96EX3 536 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 SGCZQ96LD1 299 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 KCNC2Q96PR1 638 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 TTYH2Q9BSA4 534 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 EFCAB11Q9BUY7 163 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 CNOT10Q9H9A5 744 aaKnown RBP15.6■□□□□ 0.09
CLN3-211ENST00000564091 LYRM4Q9HD34 91 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 TUBA8Q9NY65 449 aaPredicted RBP15.6■□□□□ 0.09
CLN3-211ENST00000564091 CD274Q9NZQ7 290 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 SNX24Q9Y343 169 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 FAM215AQ9Y5M1 114 aa15.6■□□□□ 0.09
CLN3-211ENST00000564091 A0A0G2JNJ9 132 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 A0A1B0GVC2 190 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 OR14I1A6ND48 311 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 SYNDIG1LA6NDD5 238 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 BCKDKO14874 412 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 KLK8O60259 260 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 CCNT2O60583 730 aaKnown RBP15.59■□□□□ 0.09
CLN3-211ENST00000564091 KRT38O76015 456 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 ATP5A1P25705 553 aaKnown RBP15.59■□□□□ 0.09
CLN3-211ENST00000564091 GMPRP36959 345 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 MSH2P43246 934 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 ART1P52961 327 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 MRPS25P82663 173 aaKnown RBP15.59■□□□□ 0.09
CLN3-211ENST00000564091 IRF8Q02556 426 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 ASPHQ12797 758 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 CHIT1Q13231 466 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 SERTAD2Q14140 314 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 HIST2H2ACQ16777 129 aaPredicted RBP15.59■□□□□ 0.09
CLN3-211ENST00000564091 HIST2H2AA3Q6FI13 130 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 OPN5Q6U736 354 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 B3GNT6Q6ZMB0 384 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 LIX1LQ8IVB5 337 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 GOLM1Q8NBJ4 401 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 OR8K3Q8NH51 312 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 DOK4Q8TEW6 326 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 ZNF721Q8TF20 911 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 RUNDC3BQ96NL0 473 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 CNPPD1Q9BV87 410 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 SACM1LQ9NTJ5 587 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 ALKBH4Q9NXW9 302 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 NSMCE4AQ9NXX6 385 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 Q9UFV3 132 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 KCNN3Q9UGI6 736 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 PTBP2Q9UKA9 531 aaKnown RBP15.59■□□□□ 0.09
CLN3-211ENST00000564091 ACAD8Q9UKU7 415 aa15.59■□□□□ 0.09
CLN3-211ENST00000564091 FIGNL2A6NMB9 653 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 EFCAB8A8MWE9 144 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 SAP18O00422 153 aaKnown RBP15.58■□□□□ 0.08
CLN3-211ENST00000564091 TGFB1P01137 390 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 P04436 131 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 SSTR1P30872 391 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 PIGAP37287 484 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 ADH7P40394 386 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 RPL21P46778 160 aaKnown RBP15.58■□□□□ 0.08
CLN3-211ENST00000564091 ZFP36L2P47974 494 aaKnown RBP15.58■□□□□ 0.08
CLN3-211ENST00000564091 DLX5P56178 289 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 LAPTM5Q13571 262 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 SLC10A1Q14973 349 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 PIGGQ5H8A4 983 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 PAGE2BQ5JRK9 111 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 CES4AQ5XG92 561 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 CLYBLQ8N0X4 340 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 ZNF473Q8WTR7 871 aaKnown RBP15.58■□□□□ 0.08
CLN3-211ENST00000564091 EXT2Q93063 718 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 PPWD1Q96BP3 646 aaKnown RBP15.58■□□□□ 0.08
CLN3-211ENST00000564091 TBCDQ9BTW9 1192 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 SORBS1Q9BX66 1292 aaKnown RBP15.58■□□□□ 0.08
CLN3-211ENST00000564091 MS4A8Q9BY19 250 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 ROGDIQ9GZN7 287 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 LDAHQ9H6V9 325 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 COPS7AQ9UBW8 275 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 ATG4BQ9Y4P1 393 aa15.58■□□□□ 0.08
CLN3-211ENST00000564091 ZNF469Q96JG9 3925 aaPredicted RBP15.58■□□□□ 0.08
CLN3-211ENST00000564091 HRKO00198 91 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 AQP7O14520 342 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 FGF17O60258 216 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 DIAPH2O60879 1101 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 ZWINTO95229 277 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 PCNAP12004 261 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 HIST1H1TP22492 207 aaPredicted RBP15.57■□□□□ 0.08
CLN3-211ENST00000564091 CPN2P22792 545 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 DNAJA1P31689 397 aaKnown RBP15.57■□□□□ 0.08
CLN3-211ENST00000564091 MAN2A2P49641 1150 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 ATP6V0D1P61421 351 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 SNTB1Q13884 538 aaKnown RBP15.57■□□□□ 0.08
CLN3-211ENST00000564091 HYAL4Q2M3T9 481 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 AP5B1Q2VPB7 878 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 CDKL4Q5MAI5 379 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 DGAT2L6Q6ZPD8 337 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 PDPRQ8NCN5 879 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 SRFBP1Q8NEF9 429 aaKnown RBP15.57■□□□□ 0.08
CLN3-211ENST00000564091 PYROXD1Q8WU10 500 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 TSPAN17Q96FV3 270 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 SENP5Q96HI0 755 aaPredicted RBP15.57■□□□□ 0.08
CLN3-211ENST00000564091 EXO5Q9H790 373 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 SPACA6W5XKT8 324 aa15.57■□□□□ 0.08
CLN3-211ENST00000564091 INTS1Q8N201 2190 aaKnown RBP15.56■□□□□ 0.08
CLN3-211ENST00000564091 ZNF407Q9C0G0 2248 aa15.56■□□□□ 0.08
CLN3-211ENST00000564091 RFPL3SP0C7P2 107 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms