RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 RPS3P23396 243 aaKnown RBP eCLIP4.05□□□□□ -1.76
SPG11-211ENST00000558561 PCSK6P29122 969 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 OAS2P29728 719 aaKnown RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 PRKAR1BP31321 381 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 CASQ1P31415 396 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 UQCRC1P31930 480 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 TSPAN7P41732 249 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 HALP42357 657 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 CAPZBP47756 277 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 CD151P48509 253 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 ALDH9A1P49189 494 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 FNTAP49354 379 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 CLK3P49761 638 aaKnown RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 PDE1BQ01064 536 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 DR1Q01658 176 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 PDIA2Q13087 525 aaKnown RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 GPS2Q13227 327 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 PMS2P11Q13670 270 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 ERV3-1Q14264 604 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 KRT33BQ14525 404 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 TYSND1Q2T9J0 566 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 FBXO48Q5FWF7 155 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 DNTTIP2Q5QJE6 756 aaKnown RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 PLEKHS1Q5SXH7 462 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 C1orf189Q5VU69 101 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 DUPD1Q68J44 220 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 PTRHD1Q6GMV3 140 aaKnown RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 KIAA0930Q6ICG6 404 aaPredicted RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 FRMPD2BQ6IN97 320 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 INO80CQ6PI98 192 aaPredicted RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 PACS1Q6VY07 963 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 PIWIL4Q7Z3Z4 852 aaKnown RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 AMIGO1Q86WK6 493 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 PLD3Q8IV08 490 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 RASGRP3Q8IV61 690 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 CEP97Q8IW35 865 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 CPNE9Q8IYJ1 553 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 SLC22A15Q8IZD6 547 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 CACNA2D3Q8IZS8 1091 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 OR4N4Q8N0Y3 316 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 LSMEM2Q8N112 164 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 DNAJC22Q8N4W6 341 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 OR2C3Q8N628 320 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 OTUD6BQ8N6M0 293 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 EEF1AKMT1Q8WVE0 214 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 ANKRD49Q8WVL7 239 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 XAGE5Q8WWM1 108 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 IPCEF1Q8WWN9 437 aaPredicted RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 SLC9A6Q92581 669 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 SH3KBP1Q96B97 665 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 ZBTB9Q96C00 473 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 LRRC45Q96CN5 670 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 STAMBPL1Q96FJ0 436 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 SLC41A2Q96JW4 573 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 ZNF514Q96K75 400 aaPredicted RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 C16orf45Q96MC5 204 aaPredicted RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 PKP4Q99569 1192 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 ELAC2Q9BQ52 826 aaKnown RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 ACAT2Q9BWD1 397 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 SRMSQ9H3Y6 488 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 TFB2MQ9H5Q4 396 aaKnown RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 MRM3Q9HC36 420 aaKnown RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 THSD1Q9NS62 852 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 SLC22A11Q9NSA0 550 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 HOMER3Q9NSC5 361 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 SERTAD4Q9NUC0 356 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 POT1Q9NUX5 634 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 EPHA6Q9UF33 1036 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 ANAPC5Q9UJX4 755 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 FBXO5Q9UKT4 447 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 ASF1AQ9Y294 204 aa4.05□□□□□ -1.76
SPG11-211ENST00000558561 TMEM184BQ9Y519 407 aaPredicted RBP4.05□□□□□ -1.76
SPG11-211ENST00000558561 BSNQ9UPA5 3926 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 MAGEB16A2A368 324 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 CCDC151A5D8V7 595 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 H3BMM5 538 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 TMX2-CTNND1H3BSU7 103 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 AGPSO00116 658 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 CDC7O00311 574 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 LIN7AO14910 233 aaPredicted RBP4.04□□□□□ -1.76
SPG11-211ENST00000558561 RRP8O43159 456 aaKnown RBP4.04□□□□□ -1.76
SPG11-211ENST00000558561 LCMT2O60294 686 aaKnown RBP4.04□□□□□ -1.76
SPG11-211ENST00000558561 ALOX12BO75342 701 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 URI1O94763 535 aaPredicted RBP4.04□□□□□ -1.76
SPG11-211ENST00000558561 USP1O94782 785 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 SEC31AO94979 1220 aaKnown RBP4.04□□□□□ -1.76
SPG11-211ENST00000558561 TSPAN12O95859 305 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 PRKAR1AP10644 381 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 FGF5P12034 268 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 VCLP18206 1134 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 TCN2P20062 427 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 ITGAXP20702 1163 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 MAGP20916 626 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 SAT1P21673 171 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 CD9P21926 228 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 CDH3P22223 829 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 SERPINB3P29508 390 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 PKLRP30613 574 aa4.04□□□□□ -1.76
SPG11-211ENST00000558561 DLSTP36957 453 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms